Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010102.1 Corchorus olitorius cultivar O-4 contig10134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2570
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:926 original size:333 final size:330
Alignment explanation
Indices: 1--2103 Score: 2328
Period size: 333 Copynumber: 6.3 Consensus size: 330
* *
1 TATCCAATTAATTTATGATAAAACCGAATGAAGATTTGGATGCTCGTAAAAACATATCCTTAAAT
1 TATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAAT
*
66 CCATTGTAGCTAAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATC-
66 CCATTGTAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCA
*
130 TAGCAAAACTGAGCCGGGGCCCTGGAAAGCGTTTTCAACCAGAAACCGTGATGGTTAGTACACGA
131 T-GCAAAACTGAGCCGGGGCCC-GGAAAGCGTTTTCAACAAGAAACCGTGATGGTTAGTACACGA
* * * *
195 TTTCAGCT-ATAATTTTGCAAAAACTGGTCAGAAATTTTTTTTC-ACAATTTTTGGCCACAGTGC
194 TTTCAGCTCA-AATTTTGCAAAAACTGATCCGAAATTTTTTTTCTA-AATTTTTGGCCACAATAC
* * * *
258 TCATAAAAAATATATAATTCAATGCCAAAAAGATTTCAAGCCTTTTCATGCTTAAAATATGGTTT
257 TCATAAAAAA-ATATAATTCAACGCCAAAAAGATTTCAGGGCTTTTCATGCTTCAAATATGGTTT
*
323 TTCATTTTTT
321 TTCTTTTTTT
* * * * *
333 AATCCAATTAATTTCTAATAAAACCCGAATCAAGA-TTCAGAAGCTCGTTAAAACATATCCTTAA
1 TATCCAATTAATTTCTGATAAAA-CCGAATGAAGATTTC-GATGCTCGTAAAAACATATCCTTAA
* * * * * * * * *
397 ATTCAATGTTA-TTGAGATTTCATTAGATTAATATAGATATTTCTAGGAGTTTCGACGTCAGAAA
64 ATCCATTG-TAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAA
* * * * * ** *
461 TCATGTAAATCTGAGCTGGACGCCCAGAGCGCCTTTTCAACTGAA-AAACCGTGATGGTTAGTAC
128 TCATGCAAAACTGAGCCGG-GGCCCGGAAAGCGTTTTCAAC--AAGAAACCGTGATGGTTAGTAC
* * *
525 ACGATTTCAGCTGAAATTTTGCAAAAGCTGATCCGAAAATTTTTTTTCTGAATATTTT-GCCACA
190 ACGATTTCAGCTCAAATTTTGCAAAAACTGATCCG-AAATTTTTTTTCTAAAT-TTTTGGCCACA
* * **
589 ATACTCATAAAAAAATATAATTCAACGCCAAAAATATTTCAGGGCTTTTCAAGCTTCAAATACAG
253 ATACTCATAAAAAAATATAATTCAACGCCAAAAAGATTTCAGGGCTTTTCATGCTTCAAATATGG
654 TTTTTCTTTTTTTT
318 TTTTTC-TTTTTTT
* *
668 TAATCCAATTAATTTCTGATAAAACTGAATGAAGATTTCGATGCTCGTAAAAAGATATCCTTAAA
1 T-ATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAA
* * *
733 TACATTGTAGATGAGATTTGATTAGATTCATATAGATATTTCAAGGTGTCTCGACGCCAAAAATC
65 TCCATTGTAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATC
* * * *
798 -TAGCAAAACTGAGCCGGGGCCCAGAAAGCATTTTCAGCAAGAAATCGTGATGGTTAGTACACGA
130 AT-GCAAAACTGAGCCGGGGCCCGGAAAGCGTTTTCAACAAGAAACCGTGATGGTTAGTACACGA
* *
862 TTTCAGCTCAAATTTTGCAAAAACTTATCCGAAATTTTTTTCTCTAAATTTTTGGCCCCAATACT
194 TTTCAGCTCAAATTTTGCAAAAACTGATCCGAAATTTTTTT-TCTAAATTTTTGGCCACAATACT
* * * * *
927 CATAGAAAATATATAATCCAGCGCTAAAAAGATTTAAGGGCTTTTCATGCTTCAAATATGGTTTT
258 CATA-AAAAAATATAATTCAACGCCAAAAAGATTTCAGGGCTTTTCATGCTTCAAATATGG-TTT
992 TTCTTTTTTTTTT
321 TTC---TTTTTTT
*
1005 GTATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGGAAAAACATATCCTTAAA
1 -TATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAA
* *
1070 TCCATTGTTGCTGAGATTTGATTAGATTCATATAGATA-TTCAAGGCGTCTCGACGCCAAAAATC
65 TCCATTGTAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATC
* * * * * *
1134 TTG-AAAACTGAGCCTGGGCCCTGGAACGCGCTTTCAGCCAGAAACCGTGATGGTTAGTACACGA
130 ATGCAAAACTGAGCCGGGGCCC-GGAAAGCGTTTTCAACAAGAAACCGTGATGGTTAGTACACGA
* * * *
1198 TTTCAGCTAAAATTTTGCAAAAACTAATCAGAAATTTTTTTTC-AGAATTTTTGGCCACAATGCT
194 TTTCAGCTCAAATTTTGCAAAAACTGATCCGAAATTTTTTTTCTA-AATTTTTGGCCACAATACT
* * * * *
1262 CATAAAAAATATATAATTCAACACCAAAAATATTTCAAGACTTTTCATGCTTAAAATATGGTTTT
258 CATAAAAAA-ATATAATTCAACGCCAAAAAGATTTCAGGGCTTTTCATGCTTCAAATATGGTTTT
*
1327 TCGTTTTTT
322 TCTTTTTTT
* * *
1336 TATCCAATTAATTTCTGATAAAACCCGAATCAAGA-TTCAGAAGCTCGTTAAAACATATCCTTAA
1 TATCCAATTAATTTCTGATAAAA-CCGAATGAAGATTTC-GATGCTCGTAAAAACATATCCTTAA
* * * * * * * *
1400 ATTCAATGTTA-CTGAAATTTGAATAGATTAATATAGATATTTCTAGGAG-CTTCGACGTCAGAA
64 ATCCATTG-TAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTC-TCGACGCCAAAA
* * * ** * * * *
1463 ATCATGTAAATCTGAGCCGGGTGCCTGGAGCGCCTTTTCAGC-TGAAAACCGTGATAGTTAGTAC
127 ATCATGCAAAACTGAGCCGGG-GCCCGGAAAGCGTTTTCAACAAG-AAACCGTGATGGTTAGTAC
* * * * *
1527 ACGATTTC-G-TAGGAAATATTGCAAAAGCTGATCCGAAAATTTTTTTCTGAATATTTT-GCCAC
190 ACGATTTCAGCT--CAAATTTTGCAAAAACTGATCCGAAATTTTTTTTCTAAAT-TTTTGGCCAC
* * * * * *
1589 AATACTCATAAAAAAATATATTTCAGCGCCAAAAATATTTCAGGTCTTTTCAAGATTCAAATATG
252 AATACTCATAAAAAAATATAATTCAACGCCAAAAAGATTTCAGGGCTTTTCATGCTTCAAATATG
*
1654 GTTTTTCCGTTTTTT
317 GTTTTT-CTTTTTTT
* * * * * *
1669 TATCCTATTAATTTCTGTTAAAACCCGAATCAAGA-TTCAGAAGCTCGTTAAAACATATTCTTAA
1 TATCCAATTAATTTCTGATAAAA-CCGAATGAAGATTTC-GATGCTCGTAAAAACATATCCTTAA
* * * * * * * **
1733 ATCCAATGT-GACTGAGATTTGATTAGATTAATATTGACACTTCAAGCAGTTTCGAC-ATAAAAA
64 ATCCATTGTAG-CTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAA
* * *
1796 TCATGCTAAACTGAGCCGGGGCCCCGTAACA-CGTTTTCAACAAGAAATCGTGATGGTTAGTACA
128 TCATGCAAAACTGAGCCGGGG-CCCGGAA-AGCGTTTTCAACAAGAAACCGTGATGGTTAGTACA
** *
1860 CGATTTCAGCTCAAATTTTGCAAAAACTGATCCGAAATTTTTTTTTCTAAATTTTTTTTTCCCCA
191 CGATTTCAGCTCAAATTTTGCAAAAACTGATCCGAAA-TTTTTTTTCTAAA--TTTTTGGCCACA
*** * ** * * *
1925 ATACTCAGGGAAAAATATAATCCTGCG-CTAAAAGATTTAAGGGCTTTTTATGCTTCAAATATGG
253 ATACTCATAAAAAAATATAATTCAACGCCAAAAAGATTTCAGGGCTTTTCATGCTTCAAATATGG
* *
1989 CTCTTCTTTTTTT
318 TTTTTCTTTTTTT
* *
2002 TATCCAATTAATTTCTGAT-AAACCGAATGAAGATTTCCATGCTCGTAAAAGCATATCCTTAAAT
1 TATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAAT
* * *
2066 CCATTATAGTTTAGATTTGATTAGATTCATATAGATAT
66 CCATTGTAGCTGAGATTTGATTAGATTCATATAGATAT
2104 CCCTAAAAAG
Statistics
Matches: 1500, Mismatches: 216, Indels: 111
0.82 0.12 0.06
Matches are distributed among these distances:
330 26 0.02
331 132 0.09
332 200 0.13
333 431 0.29
334 227 0.15
335 251 0.17
336 128 0.09
337 104 0.07
338 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (330 bp):
TATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAAT
CCATTGTAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCA
TGCAAAACTGAGCCGGGGCCCGGAAAGCGTTTTCAACAAGAAACCGTGATGGTTAGTACACGATT
TCAGCTCAAATTTTGCAAAAACTGATCCGAAATTTTTTTTCTAAATTTTTGGCCACAATACTCAT
AAAAAAATATAATTCAACGCCAAAAAGATTTCAGGGCTTTTCATGCTTCAAATATGGTTTTTCTT
TTTTT
Found at i:1336 original size:668 final size:656
Alignment explanation
Indices: 1--2103 Score: 2439
Period size: 668 Copynumber: 3.2 Consensus size: 656
* *
1 TATCCAATTAATTTATGATAAAACCGAATGAAGATTTGGATGCTCGTAAAAACATATCCTTAAAT
1 TATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAAT
*
66 CCATTGTAGCTAAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCT
66 CCATTGTAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCT
* *
131 AGCAAAACTGAGCCGGGGCCCTGGAAAGCGTTTTCAACCAGAAACCGTGATGGTTAGTACACGAT
131 AGCAAAACTGAGCCGGGGCCC-GGAAAGCATTTTC-AGCAGAAACCGTGATGGTTAGTACACGAT
* * * *
196 TTCAGCTATAATTTTGCAAAAACTGGTCAGAAATTTTTTTTC-ACAATTTTTGGCCACAGTGCTC
194 TTCAGCTA-AATTTTGCAAAAACTGATCCGAAATTTTTTTTCTA-AATTTTTGGCCACAATACTC
** *
260 ATAAAAAATATATAATTCAATGCCAAAAAGATTTCAA-GCCTTTTCATGCTTAAAATATGGTTTT
257 AT-AAAAATATATAATTCAGCGCCAAAAAGATTT-AAGGCCTTTTCATGCTTCAAATATGGTTTT
* *
324 TCATTTTTTAATCCAATTAATTTCTAATAAAACCCGAATCAAGATTCAGAAGCTCGTTAAAACAT
320 TCATTTTTTTATCCAATTAATTTCTGATAAAACCCGAATCAAGATTCAGAAGCTCGTTAAAACAT
* ** * * * *
389 ATCCTTAAATTCAATGTTATTGAGATTTCATTAGATTAATATAGATATTTCTAGGAGTTTCGACG
385 ATCCTTAAATCCAATGTTGCTGAGATTTGATTAGATTAATATAGATACTTCAAGGCGTTTCGACG
* * * * * *
454 TCAGAAATCATGTAAATCTGAG-CTGGACGCCCAGAGCGC-CTTTTCAACTGAA-AAACCGTGAT
450 ACAAAAATCATGCAAAACTGAGCCTGG--GCCCGGAACGCGC-TTTCAAC--AAGAAACCGTGAT
* * *
516 GGTTAGTACACGATTTCAGCTGAAATTTTGCAAAAGCTGATCCGAAAATTTTTTTTCTGAATATT
510 GGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAACTGATCCG-AAATTTTTTTTCAGAAT-TT
* *
581 TTGCCACAATACTCATAAAAAAATATAATTCAACGCCAAAAATATTTCAGGGCTTTTCAAGCTTC
573 TTGCCACAATACTCATAAAAAAATATAATTCAAC-CCAAAAATATTTCAAGGCTTTTCATGCTTC
**
646 AAATACAGTTTTTCTTTTTTTT
637 AAATATGGTTTTTC--TTTTTT
* *
668 TAATCCAATTAATTTCTGATAAAACTGAATGAAGATTTCGATGCTCGTAAAAAGATATCCTTAAA
1 T-ATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAA
* * *
733 TACATTGTAGATGAGATTTGATTAGATTCATATAGATATTTCAAGGTGTCTCGACGCCAAAAATC
65 TCCATTGTAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATC
* *
798 TAGCAAAACTGAGCCGGGGCCCAGAAAGCATTTTCAGCAAGAAATCGTGATGGTTAGTACACGAT
130 TAGCAAAACTGAGCCGGGGCCCGGAAAGCATTTTCAGC-AGAAACCGTGATGGTTAGTACACGAT
* *
863 TTCAGCTCAAATTTTGCAAAAACTTATCCGAAATTTTTTTCTCTAAATTTTTGGCCCCAATACTC
194 TTCAGCT-AAATTTTGCAAAAACTGATCCGAAATTTTTTT-TCTAAATTTTTGGCCACAATACTC
* * *
928 ATAGAAAATATATAATCCAGCGCTAAAAAGATTTAAGGGCTTTTCATGCTTCAAATATGGTTTTT
257 ATA-AAAATATATAATTCAGCGCCAAAAAGATTTAAGGCCTTTTCATGCTTCAAATATGG-TTTT
* * * **
993 TCTTTTTTTTTTGTATCCAATTAATTTCTGATAAAA-CCGAATGAAGATTTC-GATGCTCGGAAA
320 TC---ATTTTTT-TATCCAATTAATTTCTGATAAAACCCGAATCAAGA-TTCAGAAGCTCGTTAA
* * *
1056 AACATATCCTTAAATCCATTGTTGCTGAGATTTGATTAGATTCATATAGATA-TTCAAGGCGTCT
380 AACATATCCTTAAATCCAATGTTGCTGAGATTTGATTAGATTAATATAGATACTTCAAGGCGTTT
* * * *
1120 CGACGCCAAAAATCTTG-AAAACTGAGCCTGGGCCCTGGAACGCGCTTTCAGCCAGAAACCGTGA
445 CGACGACAAAAATCATGCAAAACTGAGCCTGGGCCC-GGAACGCGCTTTCAACAAGAAACCGTGA
* *
1184 TGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAACTAATCAGAAATTTTTTTTCAGAATTTT
509 TGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAACTGATCCGAAATTTTTTTTCAGAATTTT
* *
1249 TGGCCACAATGCTCATAAAAAATATATAATTCAACACCAAAAATATTTCAAGACTTTTCATGCTT
574 T-GCCACAATACTCATAAAAAA-ATATAATTCAAC-CCAAAAATATTTCAAGGCTTTTCATGCTT
*
1314 AAAATATGGTTTTTCGTTTTTT
636 CAAATATGGTTTTTC-TTTTTT
* * *
1336 TATCCAATTAATTTCTGATAAAACCCGAATCAAGA-TTCAGAAGCTCGTTAAAACATATCCTTAA
1 TATCCAATTAATTTCTGATAAAA-CCGAATGAAGATTTC-GATGCTCGTAAAAACATATCCTTAA
* * * * * * * *
1400 ATTCAATGTTA-CTGAAATTTGAATAGATTAATATAGATATTTCTAGGAG-CTTCGACGTCAGAA
64 ATCCATTG-TAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTC-TCGACGCCAAAA
* * * ** * * *
1463 ATC-ATGTAAATCTGAGCCGGGTGCCTGGAGCGCCTTTTCAGCTGAAAACCGTGATAGTTAGTAC
127 ATCTA-GCAAAACTGAGCCGGG-GCCCGGAAAGCATTTTCAGCAG-AAACCGTGATGGTTAGTAC
* * * * *
1527 ACGATTTCGTAG-GAAATATTGCAAAAGCTGATCCGAAAATTTTTTTCTGAATATTTT-GCCACA
189 ACGATTTC--AGCTAAATTTTGCAAAAACTGATCCGAAATTTTTTTTCTAAAT-TTTTGGCCACA
* * * * * * *
1590 ATACTCATAAAAAAATATATTTCAGCGCCAAAAATATTTCAGGTCTTTTCAAGATTCAAATATGG
251 ATACTCATAAAAATATATAATTCAGCGCCAAAAAGATTTAAGGCCTTTTCATGCTTCAAATATGG
* * *
1655 TTTTTCCGTTTTTTTATCCTATTAATTTCTGTTAAAACCCGAATCAAGATTCAGAAGCTCGTTAA
316 TTTTT-CATTTTTTTATCCAATTAATTTCTGATAAAACCCGAATCAAGATTCAGAAGCTCGTTAA
* * *
1720 AACATATTCTTAAATCCAATG-TGACTGAGATTTGATTAGATTAATATTGACACTTCAA-GCAGT
380 AACATATCCTTAAATCCAATGTTG-CTGAGATTTGATTAGATTAATATAGATACTTCAAGGC-GT
* * * * * * *
1783 TTCGAC-ATAAAAATCATGCTAAACTGAGCCGGGGCCCCGTAACACGTTTTCAACAAGAAATCGT
443 TTCGACGACAAAAATCATGCAAAACTGAGCCTGGG-CCCGGAACGCGCTTTCAACAAGAAACCGT
*
1847 GATGGTTAGTACACGATTTCAGCTCAAATTTTGCAAAAACTGATCCGAAATTTTTTTTTCTA-AA
507 GATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAACTGATCCGAAA-TTTTTTTTC-AGAA
* * *** * ** * * * *
1911 TTTTTTTTTCCCCAATACTCAGGGAAAAATATAATCCTGCGCTAAAAGATTT-AAGGGCTTTTTA
570 ---TTTTTGCCACAATACTCATAAAAAAATATAATTCAACCCAAAAATATTTCAA-GGCTTTTCA
* *
1975 TGCTTCAAATATGGCTCTTCTTTTTTT
631 TGCTTCAAATATGGTTTTTC-TTTTTT
* *
2002 TATCCAATTAATTTCTGAT-AAACCGAATGAAGATTTCCATGCTCGTAAAAGCATATCCTTAAAT
1 TATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAAT
* * *
2066 CCATTATAGTTTAGATTTGATTAGATTCATATAGATAT
66 CCATTGTAGCTGAGATTTGATTAGATTCATATAGATAT
2104 CCCTAAAAAG
Statistics
Matches: 1230, Mismatches: 161, Indels: 93
0.83 0.11 0.06
Matches are distributed among these distances:
663 28 0.02
664 140 0.11
665 100 0.08
666 79 0.06
667 164 0.13
668 385 0.31
669 190 0.15
670 19 0.02
671 30 0.02
672 71 0.06
673 24 0.02
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (656 bp):
TATCCAATTAATTTCTGATAAAACCGAATGAAGATTTCGATGCTCGTAAAAACATATCCTTAAAT
CCATTGTAGCTGAGATTTGATTAGATTCATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCT
AGCAAAACTGAGCCGGGGCCCGGAAAGCATTTTCAGCAGAAACCGTGATGGTTAGTACACGATTT
CAGCTAAATTTTGCAAAAACTGATCCGAAATTTTTTTTCTAAATTTTTGGCCACAATACTCATAA
AAATATATAATTCAGCGCCAAAAAGATTTAAGGCCTTTTCATGCTTCAAATATGGTTTTTCATTT
TTTTATCCAATTAATTTCTGATAAAACCCGAATCAAGATTCAGAAGCTCGTTAAAACATATCCTT
AAATCCAATGTTGCTGAGATTTGATTAGATTAATATAGATACTTCAAGGCGTTTCGACGACAAAA
ATCATGCAAAACTGAGCCTGGGCCCGGAACGCGCTTTCAACAAGAAACCGTGATGGTTAGTACAC
GATTTCAGCTAAAATTTTGCAAAAACTGATCCGAAATTTTTTTTCAGAATTTTTGCCACAATACT
CATAAAAAAATATAATTCAACCCAAAAATATTTCAAGGCTTTTCATGCTTCAAATATGGTTTTTC
TTTTTT
Found at i:1913 original size:14 final size:14
Alignment explanation
Indices: 1894--1920 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1884 AACTGATCCG
1894 AAATTTTTTTTTCT
1 AAATTTTTTTTTCT
1908 AAATTTTTTTTTC
1 AAATTTTTTTTTC
1921 CCCAATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (14 bp):
AAATTTTTTTTTCT
Found at i:2224 original size:158 final size:155
Alignment explanation
Indices: 1954--2261 Score: 526
Period size: 158 Copynumber: 2.0 Consensus size: 155
1944 ATCCTGCGCT
1954 AAAAGATTTAAGGGCTTTTTATGCTTCAAATATGGCTCTTCTTTTTTTTATCCAATTAATTTCTG
1 AAAAGATTTAAGGGCTTTTTATGCTTCAAATATGGCTCTTCTTTTTTTTATCCAATTAATTTCTG
* * *
2019 ATAAACCGAATGAAGATTTCCATGCTCGTAAAAGCATATCCTTAAATCCATTATAGTTTAGATTT
66 ATAAACCGAATGAAGATTTCCATGCTCGTAAAAACATATCCTTAAATCCATTATAGCTGAGATTT
2084 GATTAGATTCATATAGATATCCCTA
131 GATTAGATTCATATAGATATCCCTA
* *
2109 AAAAGATTTCAGGGCTTTTTATGCTTCAAATATGGCTTTTCCTTTTTTTTTATCCAATTAATTTC
1 AAAAGATTTAAGGGCTTTTTATGCTTCAAATATGGCTCTT-C-TTTTTTTTATCCAATTAATTTC
**
2174 TGATAAAACCGAATGAAGATTTTGATGCTCGTAAAAACATATCCTTAAATCCATTATAGCTGAGA
64 TGAT-AAACCGAATGAAGATTTCCATGCTCGTAAAAACATATCCTTAAATCCATTATAGCTGAGA
2239 TTTGATTAGATTCATATAGATAT
128 TTTGATTAGATTCATATAGATAT
2262 TTCAACAAGT
Statistics
Matches: 143, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
155 38 0.27
156 1 0.01
157 26 0.18
158 78 0.55
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (155 bp):
AAAAGATTTAAGGGCTTTTTATGCTTCAAATATGGCTCTTCTTTTTTTTATCCAATTAATTTCTG
ATAAACCGAATGAAGATTTCCATGCTCGTAAAAACATATCCTTAAATCCATTATAGCTGAGATTT
GATTAGATTCATATAGATATCCCTA
Done.