Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010109.1 Corchorus olitorius cultivar O-4 contig10141, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2824
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33


Found at i:579 original size:11 final size:11

Alignment explanation


    Indices: 563--588  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        553 AGATAATTTC

                       
        563 TTTTCTTCTAG
          1 TTTTCTTCTAG

                       
        574 TTTTCTTCTAG
          1 TTTTCTTCTAG

                
        585 TTTT
          1 TTTT

        589 TAGGCAAAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69


Consensus pattern (11 bp):   
TTTTCTTCTAG
Done.