Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010114.1 Corchorus olitorius cultivar O-4 contig10146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7444
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:2200 original size:28 final size:28

Alignment explanation


    Indices: 2146--2207  Score: 90
    Period size: 28  Copynumber: 2.2  Consensus size: 28

       2136 GGGGCTACCC

                                  *     
       2146 TAAACTAAAATCGAGACACTTTGCCCCA
          1 TAAACTAAAATCGAGACACTTTACCCCA

                                        *
       2174 TAAACTAAAATCGAGACA-TTATACCCCC
          1 TAAACTAAAATCGAGACACTT-TACCCCA

                  
       2202 TAAACT
          1 TAAACT

       2208 TTCCAAATTC


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  27    2  0.06
  28   29  0.94

ACGTcount: A:0.42, C:0.27, G:0.08, T:0.23


Consensus pattern (28 bp):   
TAAACTAAAATCGAGACACTTTACCCCA
Done.