Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010115.1 Corchorus olitorius cultivar O-4 contig10147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3566
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:1922 original size:25 final size:25

Alignment explanation


    Indices: 1894--1942  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1884 TGTTAGTTTG

                                     
       1894 TAGAGACCGAGCGAGAGTGCTCAAA
          1 TAGAGACCGAGCGAGAGTGCTCAAA

                                    
       1919 TAGAGACCGAGCGAGAGTGCTCAA
          1 TAGAGACCGAGCGAGAGTGCTCAA

       1943 GATTGTTGGG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.35, C:0.20, G:0.33, T:0.12


Consensus pattern (25 bp):   
TAGAGACCGAGCGAGAGTGCTCAAA

Found at i:2339 original size:2 final size:2

Alignment explanation


    Indices: 2324--2364  Score: 68
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       2314 TTATTACTAA

                                                                          
       2324 AT AT A- AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

             
       2364 A
          1 A

       2365 CTAAATAGTA


Statistics
Matches: 37,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   1    2  0.05
   2   35  0.95

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Done.