Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010117.1 Corchorus olitorius cultivar O-4 contig10149, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28


Found at i:442 original size:21 final size:21

Alignment explanation


    Indices: 416--456  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        406 AACCGACAAA

                  *              
        416 ACCGACCGAAAACCGACCGCC
          1 ACCGACAGAAAACCGACCGCC

                   *  *         
        437 ACCGACATAACACCGACCGC
          1 ACCGACAGAAAACCGACCGC

        457 TCGGTTTCTT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.34, C:0.46, G:0.17, T:0.02


Consensus pattern (21 bp):   
ACCGACAGAAAACCGACCGCC

Found at i:537 original size:12 final size:11

Alignment explanation


    Indices: 508--533  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        498 TTCAAAAAAT

                       
        508 AAAACCGACTA
          1 AAAACCGACTA

                       
        519 AAAACCGACTA
          1 AAAACCGACTA

                
        530 AAAA
          1 AAAA

        534 ACCGGAAACC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.62, C:0.23, G:0.08, T:0.08


Consensus pattern (11 bp):   
AAAACCGACTA
Done.