Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010120.1 Corchorus olitorius cultivar O-4 contig10152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4515
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33


Found at i:1811 original size:2 final size:2

Alignment explanation


    Indices: 1804--1834  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       1794 AAAGCGATAG

                                                          
       1804 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1835 ATGATCACAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:2506 original size:20 final size:21

Alignment explanation


    Indices: 2468--2508  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2458 AGCCCAATTT

                                 
       2468 GAAATAAAGAAAAGAAAAAGA
          1 GAAATAAAGAAAAGAAAAAGA

                         *       
       2489 GAAA-AAAGAAAGGGAAAAAG
          1 GAAATAAAGAAA-AGAAAAAG

       2509 GGATCATGAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    7  0.39
  21   11  0.61

ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02


Consensus pattern (21 bp):   
GAAATAAAGAAAAGAAAAAGA
Done.