Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010143.1 Corchorus olitorius cultivar O-4 contig10175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1277
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29


Found at i:451 original size:23 final size:22

Alignment explanation


    Indices: 425--467  Score: 59
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        415 TGAAAACGCA

                                   
        425 AAAACAAGAATTTTTTTTATCGC
          1 AAAAC-AGAATTTTTTTTATCGC

                 *  *           
        448 AAAACCGATTTTTTTTTATC
          1 AAAACAGAATTTTTTTTATC

        468 AAAAACGCAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  22   13  0.72
  23    5  0.28

ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44


Consensus pattern (22 bp):   
AAAACAGAATTTTTTTTATCGC
Done.