Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010153.1 Corchorus olitorius cultivar O-4 contig10185, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5852
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:329 original size:19 final size:20

Alignment explanation


    Indices: 276--329  Score: 65
    Period size: 21  Copynumber: 2.7  Consensus size: 20

        266 GCTGCTCTAA

                                 
        276 TAATCTCATATGTACAGTACC
          1 TAATCTCATATGTACAGTA-C

                  *            *
        297 TAATCTAATATGTACAGT-G
          1 TAATCTCATATGTACAGTAC

                     *    
        316 TAATCTCATCTGTA
          1 TAATCTCATATGTA

        330 TAGAAACAGT


Statistics
Matches: 29,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  19   12  0.41
  21   17  0.59

ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37


Consensus pattern (20 bp):   
TAATCTCATATGTACAGTAC
Done.