Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010158.1 Corchorus olitorius cultivar O-4 contig10190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10716
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34


Found at i:9266 original size:3 final size:3

Alignment explanation


    Indices: 9258--9308  Score: 84
    Period size: 3  Copynumber: 16.3  Consensus size: 3

       9248 GATAGTTGAC

                                                                         
       9258 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATAT ATAT
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T AT-T

                 
       9305 ATT A
          1 ATT A

       9309 AGTAATAATA


Statistics
Matches: 47,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   3   40  0.85
   4    7  0.15

ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63


Consensus pattern (3 bp):   
ATT

Found at i:9350 original size:5 final size:5

Alignment explanation


    Indices: 9340--9366  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

       9330 CAATAACTGA

                                            
       9340 TTTTC TTTTC TTTTC TTTTC TTTTC TT
          1 TTTTC TTTTC TTTTC TTTTC TTTTC TT

       9367 CAGGTGATTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (5 bp):   
TTTTC

Done.