Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010161.1 Corchorus olitorius cultivar O-4 contig10193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10641

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1364--1466
52
2.0
52
96
0
188
20
7
25
46
1.77
3149--3252
52
2.0
52
94
3
183
20
9
26
43
1.82
3757--3800
2
23.0
2
82
17
58
50
0
2
47
1.13
3757--3799
15
2.8
16
82
13
54
51
0
2
46
1.13
4607--4653
24
1.9
25
86
4
69
44
21
12
21
1.85
6682--6813
36
3.7
36
89
0
192
17
33
24
25
1.96
8070--8133
25
2.5
26
87
5
94
18
25
43
12
1.85
8475--8638
84
1.9
85
87
3
242
19
24
20
35
1.95
8451--8664
38
5.5
37
77
15
200
18
27
21
32
1.97
8981--9026
23
2.0
23
83
8
58
15
39
23
21
1.92
9388--9434
24
1.9
25
91
4
78
44
23
12
19
1.85
9390--9444
26
2.2
25
80
9
58
47
27
10
14
1.78
10167--10246
29
2.7
29
84
3
97
28
17
12
41
1.86
10370--10435
31
2.1
32
94
2
116
43
10
12
33
1.76

Tables:   1

The End!