Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010172.1 Corchorus olitorius cultivar O-4 contig10204, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6111
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:1304 original size:24 final size:24

Alignment explanation


    Indices: 1272--1319  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1262 ATATACATAC

                                    
       1272 TAGCAAGGGGATTTTCTAATTTTT
          1 TAGCAAGGGGATTTTCTAATTTTT

                                    
       1296 TAGCAAGGGGATTTTCTAATTTTT
          1 TAGCAAGGGGATTTTCTAATTTTT

       1320 AAGGGGGCAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.25, C:0.08, G:0.21, T:0.46


Consensus pattern (24 bp):   
TAGCAAGGGGATTTTCTAATTTTT
Done.