Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010177.1 Corchorus olitorius cultivar O-4 contig10209, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2731
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30


Found at i:675 original size:15 final size:15

Alignment explanation


    Indices: 651--681  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        641 TTTGCTTTCG

                           
        651 TTTGGCTGATGGGAA
          1 TTTGGCTGATGGGAA

                 *         
        666 TTTGGTTGATGGGAA
          1 TTTGGCTGATGGGAA

             
        681 T
          1 T

        682 GTAACATTCC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.19, C:0.03, G:0.39, T:0.39


Consensus pattern (15 bp):   
TTTGGCTGATGGGAA
Done.