Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010182.1 Corchorus olitorius cultivar O-4 contig10214, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2472
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:788 original size:319 final size:319
Alignment explanation
Indices: 1--2472 Score: 2868
Period size: 319 Copynumber: 7.7 Consensus size: 319
*
1 AAAAAATTGAAGCGCTTTTCACTCTTCTAATATCGTTTTTCCA-TTTTTT-CGAATTTATTTCTA
1 AAAAAATTGAAGCGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTA
*
64 ATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGATT
66 ATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATT
* * * * * *
129 TTGTTAGATTAATATAGATATTTCAAGGAGT-CTTTCTGCCAAAAATCATGCAAAACTGAGCC-G
131 TGGTTAGATGAATATAGATATTTCAGGGAGTGC-TTCTGCCAAAAATTATGCAAAACTCATCCGG
*
192 GGCCCCGAAACGCGTTTTTAGCTAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGA
195 GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGA
* * * * ***
257 CCCGAAAACTTTTTTCTCTATTATTTTGGCACAATACTCAGAAAAAGTATATAATTTGGTGCCAA
260 CCC-AAAA-ATTTTTCTCAATT-TTTTGCCACAATACTTAGAAAAA-TATATAATTTGAAACC-A
* *
322 AAAAAATTGAAGCGCTTTTCACGCTTCAAATATCGTTTTTCCATTTTTTT-CG-ATTTTTTTCTA
1 AAAAAATTGAAGCGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTA
* * * *
385 ATTATATC-AAACACGATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGCCTGAGATC
66 ATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATT
* * *
449 TGGTTAGATGAATATAGATATTTCAGGGTGTGCTTGTGCCAAAAATTATGCAAAATTCATCCGGG
131 TGGTTAGATGAATATAGATATTTCAGGGAGTGCTTCTGCCAAAAATTATGCAAAACTCATCCGGG
* *
514 GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGATAAGTACACGATTTCGGCTAAAAACTAAC
196 GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGAC
*
579 CCAAAAATTTTTCTCAATTTTTCGCCACAATACTTAGAAAAA-ATATAATTTGAAACCA
261 CCAAAAATTTTTCTCAATTTTTTGCCACAATACTTAGAAAAATATATAATTTGAAACCA
* * * * * *
637 AAAAAATTGAAG-GATTTTTCACGCTTCAAATATCGTTTTACCATTTTTTTTCCTAATCTATATC
1 AAAAAATTGAAGCG-CTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTTCCGAATTTATTTC
* *
701 TAATTATATCGAAACAAGATTCAGATGCTTGTAAAACCAAATCCTTAAATCCATTGTGGCTGAGA
64 TAATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGA
* *
766 TTTGGTTCGATGAATATAGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAGT-C
129 TTTGGTTAGATGAATATAGATATTTCAGGGAGTGCTTCTGCCAAAAATTATGCAAAACTCA-TCC
*
830 GGGGCCCCGAAACGCGTTTTTAGCCCAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACT
193 GGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACT
* * * * * *
895 GACACGAAAATTTTTTTCTCAATTTTTTGGCTCAATACTTAGAAAAAATATATAATTTTATGA-C
258 GAC-CCAAAA-ATTTTTCTCAATTTTTTGCCACAATACTTAG-AAAAATATATAATTTGA-AACC
959 -
319 A
* * **
959 AAAAAATTGAAGAGATTTTCACGCTTGC-AATATAATTTTTCCATTTTTTT-CGAATTTATTTCT
1 AAAAAATTGAAGCGCTTTTCACGCTT-CTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCT
* * * *
1022 AATTATATCGAAACAAGATTCAGTTGCTAGTAAAAACAAATACATAAATCCATTGTGGCTGAGAT
65 AATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGAT
* * * * * * *
1087 TTGGTTAGATTAATATAGATATTTCAAGGAGT-CTTTCTGCAAAAAATCATGCATAACTGAGCC-
130 TTGGTTAGATGAATATAGATATTTCAGGGAGTGC-TTCTGCCAAAAATTATGCAAAACTCATCCG
* * * * * *
1150 GGGCACCTAAACTCGTTTTTAGCAAAAAATCGTGATGGT--GTACACGATTTCGGCTAAAAATTG
194 GGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTG
* * * **
1213 ACCCAAAAATTTTTTTCTAAACTTTTTGCCACAATACTCAGGAAAAATATATAATTTTTAACCA
259 ACCCAAAAA--TTTTTCTCAATTTTTTGCCACAATACTTA-GAAAAATATATAATTTGAAACCA
** * * *
1277 AAAAAATTGAATG-ATTTTTCACGCTTCTAATATCGTTTTACCATTTTTTTCCTAATTTATATCT
1 AAAAAATTGAA-GCGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCT
* * *
1341 AATTATATCGAAACAAGATTCAGATGCTTGTAAAAA-AAAACCTTTAAATCTATTGTGGCTGAGA
65 AATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC-TTAAATCCATTGTGGCTGAGA
* * * * * *
1405 TTTGGTTCGATGAATATATATATTTCAGGGTGTGTTTCTGCCAAAAATTATGCAAAACTCAGCTG
129 TTTGGTTAGATGAATATAGATATTTCAGGGAGTGCTTCTGCCAAAAATTATGCAAAACTCATCCG
* * * * *
1470 GGGCCCTCGAAACACGTTTTTAACCAAAAATCGTGATGGTAAATAAACGATTTCGGCTAAAAACT
194 GGGCCC-CGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACT
*** * * *
1535 GACCCGTTAATTTTTTTTTCTCAATTTTTTGTCACAATACTTAGAAAACATATAT-ATATCAAAC
258 GACCC---AA-AAATTTTTCTCAATTTTTTGCCACAATACTTAGAAAA-ATATATAATTTGAAAC
1599 CA
318 CA
* * * * * * *
1601 AAAAAATTGAAGGGTTTTTCACGAC-TGTACTATTGTTTTACCATTTCTTTTTCCGAATTCATTT
1 AAAAAATTGAAGCGCTTTTCACG-CTTCTAATATCGTTTTTCCA-TT-TTTTTCCGAATTTATTT
* * * * *
1665 CTAATTATCTTGAAACAAAATCCAGATGCTAGTAAAAACAAATCCTTAAATCCATTGTGGCTGAG
63 CTAATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAG
* * * *
1730 ATTTGGTTCGAAGAATATAGATATTTCAGGGTGTGCTTCTTCCAAAAATTATGCAAAACTCAGT-
128 ATTTGGTTAGATGAATATAGATATTTCAGGGAGTGCTTCTGCCAAAAATTATGCAAAACTCA-TC
* * * * *
1794 TGGGGCCCCCGAAACGCATTTTTAGCCCAAAACCGTGATGGTAAGCATACGATTTCGGCTAAAAA
192 CGGGG-CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAA
* * * ***
1859 CTGACCCGAAAACTTTTTCTCTATTATTTTGGCACAATACTCATA-AAAAATATATAATTTGGTG
256 CTGACCC-AAAAATTTTTCTCAATT-TTTTGCCACAATACT--TAGAAAAATATATAATTTGAAA
1923 CCA
317 CCA
* * * * * *
1926 AAAAAATTGAAGTGCTTTTCACGCTTGTAGTATCTATTTTTCCTTTTTTTTTCGAATTTTATTTC
1 AAAAAATTGAAGCGCTTTTCACGCTTCTAATATC-GTTTTTCCATTTTTTTCCGAA-TTTATTTC
* * * *
1991 TAATTATAACGTAACAAGATTTAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGA
64 TAATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGA
* *
2056 TTTGGTTCGATGAATATAGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAGT-C
129 TTTGGTTAGATGAATATAGATATTTCAGGGAGTGCTTCTGCCAAAAATTATGCAAAACTCA-TCC
* *
2120 GGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTTATGTACACGATTTTCGGCTAAAA
193 GGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATG--GTAAGTACACGA-TTTCGGCTAAAA
* * * *
2185 ACTAACCCGAAAATTTTTCTCAATTTTTTGCCACAATACTCAGAAAAATATATAA-TT-CAACGC
255 ACTGACCCAAAAATTTTTCTCAATTTTTTGCCACAATACTTAGAAAAATATATAATTTGAAAC-C
2248 AA
319 -A
2250 AAAAAATTGAATG-G-TTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTCCGAATTTATTTCT
1 AAAAAATTGAA-GCGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCT
* *
2312 AATT-TAATCGAAACAAGATTCAGATGCTTGTAAAAAGAAATCCTTAAATCCAATT-TGGCTGAG
65 AATTAT-ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCC-ATTGTGGCTGAG
* * * * * * * *
2375 ATTTGGTTTAAATGAATGTAGATATTTCACGGAGT-CTTTTTACCAAAAATCATGCAAAACTGAG
128 ATTTGG-TTAGATGAATATAGATATTTCAGGGAGTGC-TTCTGCCAAAAATTATGCAAAACTCAT
* * * *
2439 CCGGGGACACGGAAAACGGGTTTTTAGCAAAAAA
191 CCGGGG-CCCCG-AAACGCGTTTTTAGCCAAAAA
Statistics
Matches: 1853, Mismatches: 233, Indels: 128
0.84 0.11 0.06
Matches are distributed among these distances:
314 1 0.00
315 40 0.02
316 25 0.01
317 68 0.04
318 82 0.04
319 332 0.18
320 307 0.17
321 253 0.14
322 59 0.03
323 90 0.05
324 138 0.07
325 215 0.12
326 216 0.12
327 27 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (319 bp):
AAAAAATTGAAGCGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTA
ATTATATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATT
TGGTTAGATGAATATAGATATTTCAGGGAGTGCTTCTGCCAAAAATTATGCAAAACTCATCCGGG
GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGAC
CCAAAAATTTTTCTCAATTTTTTGCCACAATACTTAGAAAAATATATAATTTGAAACCA
Found at i:1326 original size:639 final size:635
Alignment explanation
Indices: 16--2443 Score: 3048
Period size: 639 Copynumber: 3.8 Consensus size: 635
6 ATTGAAGCGC
* * *
16 TTTTCACTCTTCTAATATCGTTTTTCCA-TTTTTT-CGAATTTATTTCTAATTATATCGAAACAA
1 TTTTCACGCTTCTAATATCGTTTTACCATTTTTTTCCGAATTTATATCTAATTATATCGAAACAA
* * *
79 GATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGATTTTGTTAGATTAATAT
66 GATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGATTTGGTTCGATGAATAT
* * * * *
144 AGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGCCCCGAAACGCGTTT
131 AGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAGCGGGGCCCCGAAACGCGTTT
* *
209 TTAGCTAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGACCCGAAAACTTTTTTCT
196 TTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCT
* * **
274 CTATTATTTTGGCACAATACTCAGAAAAAGTATATAATTTGGTGCCAAAAAAAATTGAAGCGCTT
261 CAATT-TTTTGGCACAATACTCAGAAAAAATATATAATTTAATG-CAAAAAAAATTGAAG-G-TT
* *
339 TTCACGCTTCAAATATCGTTTTTCCATTTTTTTCG-ATTTTTTTCTAATTATATC-AAACACGAT
322 TTCACGCTTCAAATATCGTTTTTCCATTTTTTTCGAATTTATTTCTAATTATATCGAAACAAGAT
* * * *
402 TCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGCCTGAGATCTGGTTAGATGAATATAGA
387 TCAGATGCTAGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAGA
* * * * *
467 TATTTCAGGGTGTGCTTGTGCCAAAAATTATGCAAAATTCATCCGGGGCCCCGAAACGCGTTTTT
452 TATTTCAGGGAGTGCTTCTGCCAAAAATCATGCAAAACTCAGCC-GGGCCCCGAAACGCGTTTTT
* * *
532 AGCCAAAAACCGTGATGATAAGTACACGATTTCGGCTAAAAACTAACCCAAAAATTTTTCTC-AA
516 AGCCAAAAACCGTGATGGT-AGTACACGATTTCGGCTAAAAACTGACCCAAAAATTTTTTTCTAA
* * *
596 TTTTTCGCCACAATACTTAGAAAAA-ATATAATTTGAAACCAAAAAAATTGAAGGAT
580 TTTTT-GCCACAATACTCAGAAAAATATATAATTTGTAACCAAAAAAATTGAATGAT
* * *
652 TTTTCACGCTTCAAATATCGTTTTACCATTTTTTTTCCTAATCTATATCTAATTATATCGAAACA
1 TTTTCACGCTTCTAATATCGTTTTACCA-TTTTTTTCCGAATTTATATCTAATTATATCGAAACA
* * *
717 AGATTCAGATGCTTGTAAAACCAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTCGATGAATA
65 AGATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGATTTGGTTCGATGAATA
782 TAGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAGTCGGGGCCCCGAAACGCGT
130 TAGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAG-CGGGGCCCCGAAACGCGT
* *
847 TTTTAGCCCAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGACACGAAAATTTTTTT
194 TTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTT
* * * *
912 CTCAATTTTTTGGCTCAATACTTAGAAAAAATATATAATTTTATG-ACAAAAAATTGAAGAGATT
259 CTCAATTTTTTGGCACAATACTCAGAAAAAATATATAATTTAATGCAAAAAAAATTGAAG-G-TT
**
976 TTCACGCTTGC-AATATAATTTTTCCATTTTTTTCGAATTTATTTCTAATTATATCGAAACAAGA
322 TTCACGCTT-CAAATATCGTTTTTCCATTTTTTTCGAATTTATTTCTAATTATATCGAAACAAGA
* * * *
1040 TTCAGTTGCTAGTAAAAACAAATACATAAATCCATTGTGGCTGAGATTTGGTTAGATTAATATAG
386 TTCAGATGCTAGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAG
* * * * * * *
1105 ATATTTCAAGGAGT-CTTTCTGCAAAAAATCATGCATAACTGAGCCGGGCACCTAAACTCGTTTT
451 ATATTTCAGGGAGTGC-TTCTGCCAAAAATCATGCAAAACTCAGCCGGGCCCCGAAACGCGTTTT
* * *
1169 TAGCAAAAAATCGTGATGGT-GTACACGATTTCGGCTAAAAATTGACCCAAAAATTTTTTTCTAA
515 TAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCTAAAAACTGACCCAAAAATTTTTTTCT-A
*
1233 ACTTTTTGCCACAATACTCAGGAAAAATATATAATTTTTAACCAAAAAAATTGAATGAT
579 A-TTTTTGCCACAATACTCA-GAAAAATATATAATTTGTAACCAAAAAAATTGAATGAT
*
1292 TTTTCACGCTTCTAATATCGTTTTACCATTTTTTTCCTAATTTATATCTAATTATATCGAAACAA
1 TTTTCACGCTTCTAATATCGTTTTACCATTTTTTTCCGAATTTATATCTAATTATATCGAAACAA
* * * *
1357 GATTCAGATGCTTGTAAAAA-AAAACCTTTAAATCTATTGTGGCTGAGATTTGGTTCGATGAATA
66 GATTCAGATGCTCGTAAAAACAAATCC-GTAAATCCATTGTGGCTGAGATTTGGTTCGATGAATA
* * *
1421 TATATATTTCAGGGTGTGTTTCTGCCAAAAATTATGCAAAACTCAGCTGGGGCCCTCGAAACACG
130 TAGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAGC-GGGGCCC-CGAAACGCG
* * * * **
1486 TTTTTAACCAAAAATCGTGATGGTAAATAAACGATTTCGGCTAAAAACTGACCCGTTAATTTTTT
193 TTTTTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGACCCG--AAAATTTT
* * * * * *
1551 TTTCTCAATTTTTTGTCACAATACTTAGAAAACATATAT-ATATCAA-ACCAAAAAAATTGAAGG
256 TTTCTCAATTTTTTGGCACAATACTCAGAAAAAATATATAAT-TTAATGCAAAAAAAATTGAA-G
* * * * * *
1614 GTTTTTCACGACTGT--ACTATTGTTTTACCATTTCTTTTTCCGAATTCATTTCTAATTATCTTG
319 G-TTTTCACG-CT-TCAAATATCGTTTTTCCA-TT-TTTTT-CGAATTTATTTCTAATTATATCG
* * * *
1677 AAACAAAATCCAGATGCTAGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTCGAA
378 AAACAAGATTCAGATGCTAGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGAT
* * * **
1742 GAATATAGATATTTCAGGGTGTGCTTCTTCCAAAAATTATGCAAAACTCAGTTGGGGCCCCCGAA
443 GAATATAGATATTTCAGGGAGTGCTTCTGCCAAAAATCATGCAAAACTCAG-CCGGG-CCCCGAA
* * * * *
1807 ACGCATTTTTAGCCCAAAACCGTGATGGTAAGCATACGATTTCGGCTAAAAACTGACCCGAAAAC
506 ACGCGTTTTTAGCCAAAAACCGTGATGGT-AGTACACGATTTCGGCTAAAAACTGACCC-AAAAA
* * * * *
1872 TTTTTCTCTATTATTTTGGCACAATACTCATAAAAAATATATAATTTGGT-GCCAAAAAAATTGA
569 TTTTTTTCTAAT-TTTTGCCACAATACTCA-GAAAAATATATAATTT-GTAACCAAAAAAATTGA
*
1936 AGTG-C
631 A-TGAT
* * * * * * * * *
1941 TTTTCACGCTTGTAGTATCTATTTTTCCTTTTTTTTTCGAATTTTATTTCTAATTATAACGTAAC
1 TTTTCACGCTTCTAATATC-GTTTTACCATTTTTTTCCGAA-TTTATATCTAATTATATCGAAAC
*
2006 AAGATTTAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGATTTGGTTCGATGAAT
64 AAGATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGATTTGGTTCGATGAAT
2071 ATAGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAGTCGGGGCCCCGAAACGCG
129 ATAGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAG-CGGGGCCCCGAAACGCG
* * *
2136 TTTTTAGCCAAAAACCGTGATGATTTATGTACACGATTTTCGGCTAAAAACTAACCCGAAAA--T
193 TTTTTAGCCAAAAACCGTGATG--GTAAGTACACGA-TTTCGGCTAAAAACTGACCCGAAAATTT
* * *
2199 TTTTCTCAATTTTTTGCCACAATACTCAG-AAAAATATATAATTCAACGCAAAAAAAATTGAATG
255 TTTTCTCAATTTTTTGGCACAATACTCAGAAAAAATATATAATTTAATGCAAAAAAAATTGAA-G
* *
2263 GTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCGAATTTATTTCTAATT-TAATCGAAACA
319 GTTTTCACGCTTCAAATATCGTTTTTCCATTTTTTTCGAATTTATTTCTAATTAT-ATCGAAACA
* * *
2327 AGATTCAGATGCTTGTAAAAAGAAATCCTTAAATCCAATT-TGGCTGAGATTTGGTTTAAATGAA
383 AGATTCAGATGCTAGTAAAAACAAATCCTTAAATCC-ATTGTGGCTGAGATTTGG-TTAGATGAA
* * * * *
2391 TGTAGATATTTCACGGAGT-CTTTTTACCAAAAATCATGCAAAACTGAGCCGGG
446 TATAGATATTTCAGGGAGTGC-TTCTGCCAAAAATCATGCAAAACTCAGCCGGG
2444 GACACGGAAA
Statistics
Matches: 1555, Mismatches: 187, Indels: 91
0.85 0.10 0.05
Matches are distributed among these distances:
636 63 0.04
637 47 0.03
638 79 0.05
639 411 0.26
640 196 0.13
641 2 0.00
642 75 0.05
643 5 0.00
644 7 0.00
645 192 0.12
646 57 0.04
647 33 0.02
648 34 0.02
649 133 0.09
650 59 0.04
651 128 0.08
652 14 0.01
653 20 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (635 bp):
TTTTCACGCTTCTAATATCGTTTTACCATTTTTTTCCGAATTTATATCTAATTATATCGAAACAA
GATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTGTGGCTGAGATTTGGTTCGATGAATAT
AGATATTTCAGGGAGTGTTTCTGCCAAAAATTATGCAAAACTCAGCGGGGCCCCGAAACGCGTTT
TTAGCCAAAAACCGTGATGGTAAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCT
CAATTTTTTGGCACAATACTCAGAAAAAATATATAATTTAATGCAAAAAAAATTGAAGGTTTTCA
CGCTTCAAATATCGTTTTTCCATTTTTTTCGAATTTATTTCTAATTATATCGAAACAAGATTCAG
ATGCTAGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAGATATT
TCAGGGAGTGCTTCTGCCAAAAATCATGCAAAACTCAGCCGGGCCCCGAAACGCGTTTTTAGCCA
AAAACCGTGATGGTAGTACACGATTTCGGCTAAAAACTGACCCAAAAATTTTTTTCTAATTTTTG
CCACAATACTCAGAAAAATATATAATTTGTAACCAAAAAAATTGAATGAT
Done.