Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010193.1 Corchorus olitorius cultivar O-4 contig10225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7899
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:4539 original size:14 final size:15

Alignment explanation


    Indices: 4512--4546  Score: 54
    Period size: 14  Copynumber: 2.4  Consensus size: 15

       4502 TCTAAATTGA

                           
       4512 AGCTTTTTCTAGAAG
          1 AGCTTTTTCTAGAAG

            *              
       4527 CGCTTTTTC-AGAAG
          1 AGCTTTTTCTAGAAG

                  
       4541 AGCTTT
          1 AGCTTT

       4547 AAGCTAGGCC


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  14   10  0.56
  15    8  0.44

ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40


Consensus pattern (15 bp):   
AGCTTTTTCTAGAAG

Found at i:4706 original size:31 final size:31

Alignment explanation


    Indices: 4671--4731  Score: 86
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       4661 GCAGCTGCCC

                       *     *    *        
       4671 CATAACCAGGTGCGCGACGCGGGTCGGATCT
          1 CATAACCAGGTACGCGAAGCGGATCGGATCT

                  *                       
       4702 CATAACTAGGTACGCGAAGCGGATCGGATC
          1 CATAACCAGGTACGCGAAGCGGATCGGATC

       4732 CGGATTAGTC


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  31   26  1.00

ACGTcount: A:0.25, C:0.26, G:0.33, T:0.16


Consensus pattern (31 bp):   
CATAACCAGGTACGCGAAGCGGATCGGATCT
Done.