Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010200.1 Corchorus olitorius cultivar O-4 contig10232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10651
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Found at i:562 original size:22 final size:22
Alignment explanation
Indices: 536--577 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
526 CTTGTCTTGA
536 CAATGTATTTATGGTTGTGAGC
1 CAATGTATTTATGGTTGTGAGC
558 CAATGTATTTATGGTTGTGA
1 CAATGTATTTATGGTTGTGA
578 TGATTATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.26, T:0.43
Consensus pattern (22 bp):
CAATGTATTTATGGTTGTGAGC
Found at i:2136 original size:63 final size:63
Alignment explanation
Indices: 2064--2195 Score: 255
Period size: 63 Copynumber: 2.1 Consensus size: 63
2054 TAAAGAATCT
2064 ATTGAATTATAATTATTATTGATTTTTAGTGGAAGTTGATTGAAATAGAAAGGAAAGGATTAA
1 ATTGAATTATAATTATTATTGATTTTTAGTGGAAGTTGATTGAAATAGAAAGGAAAGGATTAA
*
2127 ATTGAATTATAATTATTATTGATTTTTAGTGGAAGTTTATTGAAATAGAAAGGAAAGGATTAA
1 ATTGAATTATAATTATTATTGATTTTTAGTGGAAGTTGATTGAAATAGAAAGGAAAGGATTAA
2190 ATTGAA
1 ATTGAA
2196 GTAGAAAATA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 68 1.00
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.39
Consensus pattern (63 bp):
ATTGAATTATAATTATTATTGATTTTTAGTGGAAGTTGATTGAAATAGAAAGGAAAGGATTAA
Found at i:4389 original size:40 final size:40
Alignment explanation
Indices: 4331--4410 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
4321 TGAGGAATCG
* *
4331 CGGCGGTTGTTCGTGCTCGACTTCGAGTCGGGGCGTGACA
1 CGGCGGTTGTTCGCGCTCGACTTAGAGTCGGGGCGTGACA
*
4371 CGGCGGTTG-TCTGCGCTCGACTTAGGGTCGGGGCGTGACA
1 CGGCGGTTGTTC-GCGCTCGACTTAGAGTCGGGGCGTGACA
4411 GGGTCTTTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.06
40 34 0.94
ACGTcount: A:0.10, C:0.25, G:0.41, T:0.24
Consensus pattern (40 bp):
CGGCGGTTGTTCGCGCTCGACTTAGAGTCGGGGCGTGACA
Found at i:7005 original size:333 final size:327
Alignment explanation
Indices: 6175--7411 Score: 1243
Period size: 334 Copynumber: 3.7 Consensus size: 327
6165 TTGAAAATAT
* * ** *
6175 GCCAAAAAAGATTGGAGGACTTTTCACAATTTTAATATCGTTTTTCATATTTTTTCTGAATTAAT
1 GCCAAAAAA-ATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCAT-TTTTTTCTGAATTAAT
* *
6240 TTCTAATTAAATCGAAACAAAATTCAGATGCACATAAAAACAAATCCTTAAATCCAATATTGTGG
64 TTCTAATTAAATCGAAACAAAATTCAGAAGCTCATAAAAACAAATCCTTAAATCC-A-A-TGTGG
* * * *** *
6305 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTCGGTGCCAAAAATCATGCAAAACA
126 CTAAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACT
* * * * * *
6370 GAGCCGTGGCCCTGTAACGCGTTTTTAGCCAAAAACAGTGATGATTAGTTCATGATTTCGGCTAA
191 GAGCCG-GGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAA
** * *
6435 AATTTTACAAAAATTGAGACGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAAAT
255 AATTTTACAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAG-TAAAATACTCATAAAAAAA-
6500 ATATAATTCGATA
318 A-ATAATTC-A-A
* * * * *
6513 TCAAAAAAAATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTTCCTATTTTTTTCCGAATTAAT
1 GCCAAAAAAATTGAAGGACTTTTAACGCTTCTAATATCGTTTTT-C-ATTTTTTTCTGAATTAAT
* * * *
6578 TTCTAATTAAATCGAAACAAAAATTCA-AATGCTCGTAAAAATAAAACCTTAAATCTAATGTGGC
64 TTCTAATTAAATCGAAAC-AAAATTCAGAA-GCTCATAAAAACAAATCCTTAAATCCAATGTGGC
* * * *
6642 TGAA-ATTTTGATAGATGAATATAAATATTTCAAGGAGTCTTGACACCAAAAATCATGTAAAACT
127 T-AAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACT
* * *
6706 GAGCC-GACCGCCGGAACGTGTTTTTAGCCGAAAACCGTGATGGTTAGTACACGATTTCGGCT-A
191 GAGCCGGGCC-CCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAA
* * **
6769 AATTTTGCAAAAATTGATCCGAAAGATTTTTCCT-TGTTTTCTAGTGAAAATACTCATAAAAAAC
255 AATTTTACAAAAATTGACCCGAAAGATTTTTCCTCAATTTT-TAGT-AAAATACTCATAAAAAA-
6833 AAATAATTCAA
317 AAATAATTCAA
* * * **
6844 CGCCAAAAAAATTGAAAGCCTTTTTAATGCTTCTAATATCGTATTTTCTATTTTATTTCAAAATT
1 -GCCAAAAAAATTGAAGGAC-TTTTAACGCTTCTAATATCGT-TTTTC-ATTTT-TTTCTGAATT
* * * * * * * *
6909 AATTTCTTATTAAATCGAAATAAGATTTAGAAACTCGTACAAACAAATTCTTAAATCCAATGTGG
61 AATTTCTAATTAAATCGAAACAAAATTCAGAAGCTCATAAAAACAAATCCTTAAATCCAATGTGG
* * * * *
6974 CTAAGATTTGGTTAGATGAATATATATATTTCAAGGAATGTTGCCACTAAAAATCATGCAAAACT
126 CTAAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACT
* *
7039 GA-CCTGGGGCCCCAGAACGCATTTTTAGCCAAAAAAAACCGTGAT-G---GTACACGATTTCGG
191 GAGCC--GGGCCCCGGAACGCGTTTTTAGCC---AAAAACCGTGATGGTTAGTACACGATTTCGG
* * * * *
7099 CTAAAATTTTCCAAAAATTGACCCGAAATATTTTTCCTCCATTTTTTAGCCACAATACTCATAGA
251 CTAAAATTTTACAAAAATTGACCCGAAAGATTTTTCCT-CAATTTTTAG-TAAAATACTCATA-A
* * * *
7164 ATATATATAATTAAAA
313 AAAAAAATAATT-CAA
* * * * * *
7180 GCCAAAAAGATTGGAGGACTCTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTT
1 GCCAAAAAAATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATTTTTTTCTGAATTAATTT
* * ** *
7245 CTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATTGAATGTGTCTAAG
66 CTAATTAAATCGAAACAAAATTCAGAAGCTCATAAAAACAAATCCTTAAATCCAATGTGGCTAAG
* * * * *
7310 ATTTGATTAGATAAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATAATGCAAAACTAAGTC
131 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAG-C
* * * * *
7375 GGGGTCTCGAAACGCGTTTTTAGCCAAAAACTGTGAT
195 CGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
7412 TTATCTTCGC
Statistics
Matches: 746, Mismatches: 124, Indels: 68
0.80 0.13 0.07
Matches are distributed among these distances:
328 11 0.01
331 139 0.19
332 24 0.03
333 149 0.20
334 152 0.20
335 84 0.11
336 72 0.10
337 41 0.05
338 43 0.06
339 31 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (327 bp):
GCCAAAAAAATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATTTTTTTCTGAATTAATTT
CTAATTAAATCGAAACAAAATTCAGAAGCTCATAAAAACAAATCCTTAAATCCAATGTGGCTAAG
ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCC
GGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
ACAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAGTAAAATACTCATAAAAAAAAATAATTC
AA
Found at i:8387 original size:332 final size:326
Alignment explanation
Indices: 7751--10284 Score: 1948
Period size: 332 Copynumber: 7.7 Consensus size: 326
7741 GACAACAGAG
* * * * * *
7751 TACACGATTTCGGCTAAAATTTTGTTAAAAA-TGACACGAAAAATTTTTCAGTCAATTTTT-GGC
1 TACACGATTTCGGCTAAAATTTTG-CAAAAATTGACCCGAAAGATATTTC-CTCAATTTTTAGCC
* * *
7814 ATAAATACTCAT-AATATATATAATTTAACGCCAAAAAGATTGGAGGACTTTTCACGCTTTTAAT
64 A-AAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGACTTTTCACGCTTTTAAT
* * *
7878 ATCGTTTTTCATATTTTTT-GAATTAATTTCTAATTATATCGAAACAAGATTCAGATGCTCT-TA
128 ATCGTTTTTCTTATTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCT-TGTA
* * * * *
7941 AAATCAAATTCTTAAATCCAATGTAGCTGAAATTTGATTAGATGAATAT-GAATATCTCAAAGAG
192 AAA-CAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAG-ATATTTCAAGGAG
* * * *
8005 TTTTGACACCAAAAATCATACAAAACTTAACCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCG
255 -TTTGGCGCCAAAAATCATGC-AAACTAAACC-GGGCCCCGGAACGCGTTTTTAGCCAAAAACCG
*
8070 TGATGATTAT
317 TGATGGTTAT
* * * * **
8080 TACACGATTTCGGCTAGAATTTTGCAAAAATTGACTCGAAAGTTATTTCCTCAAGTTTTAGCCGC
1 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAA
* * ** * * *
8145 AATATTCAGT-GAAATCATATAATTCAACGCCAAAAAGATTGAAGGGTTTTTCATGCTTCTATTA
66 AATACTCA-TAAAAAT-ATATAATTCAACGCCAAAAAGATTGAAGGACTTTTCACGCTTTTAATA
* * *
8209 TCGTTTTTCTTATTATTTTCAAGATTAATTTCTAATTAAATTGAAACATGATTCAGATGCTTGTT
129 TCGTTTTTCTTATT-TTTTCAA-ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTA
** * * * * *
8274 TTACAAATCCTTAAATCCATTATGGATGAGATTTGGTTAGATTAATATAGATATTTCAAGGAGTT
192 AAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTT
* **
8339 TCGGCGCAAAAAATCATGCAACACTAAACCGGTGCCCCGGAACGCGTTTTTAGGAAAAAAAAACC
257 T-GGCGCCAAAAATCATGCAA-ACTAAACCGG-GCCCCGGAACGCGTTTTTA-G--CCAAAAACC
*
8404 GTGAT--TTCGAC
316 GTGATGGTT--AT
* ** * * ** * ** * *
8415 TA-ACG---T--AC-ACGATTTTACAAAAATTGAACATAAATAGCTTACCTCAATTTTT-GTCGA
1 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAG-CCA
* * *
8472 AAATACCCATAATATATATATATATATAATTCAACTCCAAAAATATT-AGAGGACTTTTCACGCT
65 AAATA--C-TCATA-A-A-A-ATATATAATTCAACGCCAAAAAGATTGA-AGGACTTTTCACGCT
* * * * ** * *
8536 TTTAATACCGTTTTTCATATTTTCT-GAATTAAAATCTAATTAAATCGAAATAAGACTCAGATGC
122 TTTAATATCGTTTTTCTTATTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGC
* * * * *
8600 TCGTAAAAACAAATCTTTAAATACAATGTGGCTAAGATTTGATTAGATGAATATATATATTTCAA
187 TTGT-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAA
* * **** * * *
8665 TGAGGCTCAATGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCAACAA
251 GGA-GTTTGGCGCCAAAAATCATGC-AAACTAAACC-GGGCCCCGGAACGCGTTTTTAGC--C--
*
8730 AAAAACCGTGATGGTTAG
309 AAAAACCGTGATGGTTAT
* * * ** * **
8748 TACACGATTTCGCCTAAAATTTTACAAAAA-AGACCAAAAAAAT-TTTCCTCAATTTTTATTCAA
1 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAA
* * ** *
8811 AATACTCATGAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCATACTTCTAATA-C
66 AATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGACTTTTCACGCTTTTAATATC
* * * * ** * * * *
8875 TATTTTTCCTATTTTTCCGAATTAATTTCTAATTAAAAAGAAACATGATTCAAATGCTTAT-ATA
131 -GTTTTTCTTATTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAA
* * * * *
8939 C--A--C---AAT---A----GCTG-GCATTTGGTTAGATTAATATAGACATATCCAGGA-TTCT
195 CAAATCCTTAAATCCAATGTGGCTGAG-ATTTGATTAGATGAATATAGATATTTCAAGGAGTT-T
* * * * *
8988 CGGCGCCAAAAATCATTCAAATCTGAAA-TGGGCCTCGGAACGCATTTTTAGCCAAAAACCGTTA
258 -GGCGCCAAAAATCATGCAAA-CT-AAACCGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA
*
9052 TGATTAT
320 TGGTTAT
* *
9059 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTATCCAT
1 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAA
* * *
9124 AATATTCATAAAAATATAAAATTCAACGCCAAAAAGATTGAAGGACTTTTGACGCTTTTAATATC
66 AATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGACTTTTCACGCTTTTAATATC
* *
9189 GTTTTTCATT-TTTTTT-AAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCCTGTTAAA
131 GTTTTTC-TTATTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTG-T-AA
*** ** * * *
9252 AACAAAAAAAAAATTAAAATGAAATGTGGCTAAGATTTAATTAGATGAATATAGTTATTTCAAGG
193 AAC----AAATCCTT-AAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGG
** * * * *
9317 AGAAT---G-C-AAAAT--TG--AGCT----TGTGCCCCGAAACGCGTTTTTAGCCAAAAACCGT
253 AGTTTGGCGCCAAAAATCATGCAAACTAAACCGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGT
* *
9369 GATGGTCAG
318 GATGGTTAT
* * * * * * * **
9378 TACAGGATTTTGGCTAAAATTTTGC-AAAATATAACCCGAAAAAATTTTTCTTCAATTTTTGGAT
1 TACACGATTTCGGCTAAAATTTTGCAAAAAT-TGACCCG-AAAGATATTTCCTCAATTTTTAGCC
* * * * *
9442 AAAATACTCCTAATATATATATATAATTTAACGACAAAAAGATTGGAGGACTTTTCACGCTTATA
64 AAAATACTCATAA-A-A-ATATATAATTCAACGCCAAAAAGATTGAAGGACTTTTCACGCTTTTA
* ** **
9507 ATATCGTTTTTCATA-TTTTTCTTTATTAATTTCTAATTAAATCGAAACAAGATTTTGATGCTTG
126 ATATCGTTTTTCTTATTTTTTC-AAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTG
** * * *
9571 TAAAAACAAATTTTTAAATCCAATGTGGCTGTGATTTGATTAGATGAGTATAGATATCTCAAGGA
190 T-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGA
* ** * * ** * * *
9636 GTCTTGGTGCCAAAAATCATGCCAAACTGAGTCCAGGCCACAAAACGCTTTTTTATCCAAAAACT
254 GT-TTGGCGCCAAAAATCATG-CAAACT-AAACCGGGCCCCGGAACGCGTTTTTAGCCAAAAACC
9701 GTGATGGTTAT
316 GTGATGGTTAT
* * *
9712 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAA
1 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAA
* * * * * *
9777 AATACTCATAAAAAATATATAACTCAACACCAAAAAAATCGAAGGGCTTTTGACG-TTTCTAATA
66 AATACTCAT-AAAAATATATAATTCAACGCCAAAAAGATTGAAGGACTTTTCACGCTTT-TAATA
* * * * *
9841 TTGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAAATACAGATGCTCGTAA
129 TCGTTTTTCTTATTTTTT-CAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAA
* * * *
9906 AGACAAATCATTAAATCTAATGTGGGTGAGATTTGATTAGATGAATATAGATATTTCAAGTAGTC
193 A-ACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGT-
* * * * * * *
9971 TTGGAGCTAGAAATCATGCGAAATTGAGCCGGGTCCCCGGAACGTGTTTTTAGCCAAAAACCGTG
256 TTGGCGCCAAAAATCATGC-AAACTAAACCGGG-CCCCGGAACGCGTTTTTAGCCAAAAACCGTG
*
10036 ATGCTTTGTTAC
319 ATG----GTTAT
* * * * *
10048 TACACGATTTCAGCTAAAATTTTGCAAAAATTGACACGAAAGAT-TTCTTCTCAATTTTTGGCTA
1 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATT-TCCTCAATTTTTAGCCA
* * * *
10112 AAATACTAATAAAAATATAAAATTCAACGCCAAAAAGATTGGAGCG-CTTTTTACGCTTTTAATA
65 AAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAG-GACTTTTCACGCTTTTAATA
* * * *
10176 TCGTATTTCTTATTTTTTCTAAATTAATTTCTAATTAAATCGAAATAAGATTGAGATGCTCGTAA
129 TCGTTTTTCTTATTTTTTC-AAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGT-A
* * * * * *
10241 AAATAAATTCGTAAATCCAATGTTGTTGAGATTTGGTTAGATGA
192 AAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGA
10285 TGTAAAGTAT
Statistics
Matches: 1738, Mismatches: 345, Indels: 238
0.75 0.15 0.10
Matches are distributed among these distances:
311 43 0.02
312 45 0.03
313 86 0.05
314 3 0.00
315 27 0.02
316 43 0.02
317 1 0.00
318 48 0.03
319 70 0.04
320 29 0.02
321 2 0.00
322 8 0.00
323 66 0.04
324 42 0.02
326 3 0.00
327 4 0.00
328 62 0.04
329 48 0.03
330 63 0.04
331 158 0.09
332 355 0.20
333 101 0.06
334 152 0.09
335 159 0.09
336 78 0.04
337 1 0.00
338 19 0.01
339 9 0.01
340 13 0.01
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (326 bp):
TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAA
AATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGACTTTTCACGCTTTTAATATC
GTTTTTCTTATTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAC
AAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTTTGGC
GCCAAAAATCATGCAAACTAAACCGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTA
T
Found at i:10575 original size:31 final size:31
Alignment explanation
Indices: 10537--10641 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 31
10527 AAAGGCTAAT
10537 TGCTCAAATAAGGGCCTTATGTTTGCCAAAA
1 TGCTCAAATAAGGGCCTTATGTTTGCCAAAA
* * * **
10568 TGCTCAAATAAGGG-TTTAATCTTT--TAATT
1 TGCTCAAATAAGGGCCTT-ATGTTTGCCAAAA
* *
10597 TGGC-CAAATAAGGGCCTAACGTTTGCCAAAA
1 T-GCTCAAATAAGGGCCTTATGTTTGCCAAAA
*
10628 TGCGCAAATAAGGG
1 TGCTCAAATAAGGG
10642 TCCGATCTTT
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
29 17 0.30
30 7 0.12
31 32 0.57
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (31 bp):
TGCTCAAATAAGGGCCTTATGTTTGCCAAAA
Done.