Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010206.1 Corchorus olitorius cultivar O-4 contig10238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3648
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1852 original size:17 final size:18

Alignment explanation


    Indices: 1824--1857  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1814 TACTTTGATT

                              
       1824 ATTTGTTATTATTATTAG
          1 ATTTGTTATTATTATTAG

                             
       1842 ATTTG-TATTATTATTA
          1 ATTTGTTATTATTATTA

       1858 TTTTTAGTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   11  0.69
  18    5  0.31

ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62


Consensus pattern (18 bp):   
ATTTGTTATTATTATTAG
Done.