Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001021.1 Corchorus olitorius cultivar O-4 contig01021, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2878
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:1565 original size:21 final size:19

Alignment explanation


    Indices: 1541--1592  Score: 54
    Period size: 21  Copynumber: 2.7  Consensus size: 19

       1531 CATCTTTTAC

                                 
       1541 CAATCAAAAATCAAACATTCT
          1 CAATCAAAAATCAAAC-TT-T

                                
       1562 CAAT-AAAAATCCAAACTTT
          1 CAATCAAAAAT-CAAACTTT

               *         
       1581 -AAGCAAAAATCA
          1 CAATCAAAAATCA

       1593 TCACTTTAAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    4  0.14
  19    7  0.25
  20    8  0.29
  21    9  0.32

ACGTcount: A:0.56, C:0.21, G:0.02, T:0.21


Consensus pattern (19 bp):   
CAATCAAAAATCAAACTTT
Done.