Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010219.1 Corchorus olitorius cultivar O-4 contig10251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 732

Length: 1221
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:763 original size:333 final size:333

Alignment explanation


    Indices: 1--1221  Score: 2036
    Period size: 333  Copynumber: 3.7  Consensus size: 333

                                                                             
          1 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG
          1 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG

                          * *                     *      * * *               
         66 CGTCAAGACTCATTTATATATCTGTATTCATCTAACGACATCTCATATATAATGGATTTAACAAT
         66 CGTCAAGACTCATTAAAATATCTGTATTCATCTAACGAAATCTCAGACACAATGGATTTAACAAT

                                                                       *     
        131 TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACAACTAGAATTTTAATTTAGAAAAAATTAGA
        131 TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACAACTAGAATTTTAATTTAGAAAAACTTAGA

                                                           *                 
        196 AAAATGATATTGAAAGCGTGAAAAGCCCTAAAATCTTTTTGACGTTGTGTTATATATTTTATACG
        196 AAAATGATATTGAAAGCGTGAAAAGCCCTAAAATCTTTTTGACGTTGAGTTATATATTTTATACG

                               *    *    *                                   
        261 ATTATTGTGG-AAAAAATTTAGCGTAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
        261 ATTATTGTGGCAAAAAATTGAGCGCAAAAGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT

                    
        325 CGTGTACT
        326 CGTGTACT

                                                 *     *                     
        333 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGTCCCGGATCAGTTTTGCATGATTTTTTG
          1 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG

                                              *           *              **  
        398 CGTCAAGACTCATTAAAATATCTGTATTCATCTATCGAAATCTCAGCCACAATGGATTTAAGGAT
         66 CGTCAAGACTCATTAAAATATCTGTATTCATCTAACGAAATCTCAGACACAATGGATTTAACAAT

                *                   *          * *       *                *  
        463 TTGTATTTACGAGCATCAGAATCGATTTCCAATACGATTAGAATTATAATTTAGAAAAACTTGGA
        131 TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACAACTAGAATTTTAATTTAGAAAAACTTAGA

                           *    *                                            
        528 AAAATGATATT-AGACGCGTTAAAAGCCCTAAAATCTTTTTGACGTTGAGTTATATATTTTATAC
        196 AAAATGATATTGA-AAGCGTGAAAAGCCCTAAAATCTTTTTGACGTTGAGTTATATATTTTATAC

                                                                             
        592 GATTATTGTGGCAAAAAATTGAGCGCAAAAGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
        260 GATTATTGTGGCAAAAAATTGAGCGCAAAAGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA

                     
        657 TCGTGTACT
        325 TCGTGTACT

                                                                             
        666 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG
          1 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG

             *                                *                          **  
        731 CATCAAGACTCATTAAAATATCTGTATTCATCTATCGAAATCTCAGACACAATGGATTTAAGGAT
         66 CGTCAAGACTCATTAAAATATCTGTATTCATCTAACGAAATCTCAGACACAATGGATTTAACAAT

                                               *                          *  
        796 TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACGACTAGAATTTTAATTTAGAAAAACTTGGA
        131 TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACAACTAGAATTTTAATTTAGAAAAACTTAGA

                           *    *                       *                    
        861 AAAATGATATT-AGACGCGTTAAAAGCCCTAAAATCTTTTTGACATTGAGTTATATATTTTATAC
        196 AAAATGATATTGA-AAGCGTGAAAAGCCCTAAAATCTTTTTGACGTTGAGTTATATATTTTATAC

                                                                             
        925 GATTATTGTGGCAAAAAATTGAGCGCAAAAGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
        260 GATTATTGTGGCAAAAAATTGAGCGCAAAAGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA

                     
        990 TCGTGTACT
        325 TCGTGTACT

                                                                             
        999 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG
          1 AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG

                          * *                     *      * * *               
       1064 CGTCAAGACTCATTTATATATCTGTATTCATCTAACGACATCTCATATATAATGGATTTAACAAT
         66 CGTCAAGACTCATTAAAATATCTGTATTCATCTAACGAAATCTCAGACACAATGGATTTAACAAT

                                                                             
       1129 TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACAACTAGAATTTTAATTTAGAAAAA-TTAGA
        131 TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACAACTAGAATTTTAATTTAGAAAAACTTAGA

                                         
       1193 AAAATGATATTGAAAGCGTGAAAAGCCCT
        196 AAAATGATATTGAAAGCGTGAAAAGCCCT


Statistics
Matches: 838,  Mismatches: 48, Indels: 6
        0.94            0.05        0.01

Matches are distributed among these distances:
 331    1  0.00
 332  275  0.33
 333  562  0.67

ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Consensus pattern (333 bp):   
AACCATCACGGTTTTTGGCTCAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTG
CGTCAAGACTCATTAAAATATCTGTATTCATCTAACGAAATCTCAGACACAATGGATTTAACAAT
TTGTTTTTACGAGCATCAGAATCGTTTTCCAATACAACTAGAATTTTAATTTAGAAAAACTTAGA
AAAATGATATTGAAAGCGTGAAAAGCCCTAAAATCTTTTTGACGTTGAGTTATATATTTTATACG
ATTATTGTGGCAAAAAATTGAGCGCAAAAGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
CGTGTACT
Done.