Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010222.1 Corchorus olitorius cultivar O-4 contig10254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2529
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31


Found at i:448 original size:29 final size:30

Alignment explanation


    Indices: 391--453  Score: 76
    Period size: 29  Copynumber: 2.1  Consensus size: 30

        381 CCTTATCCGG

                         *          *     
        391 TTTTCCCTTCTTTTCTTTTTCTTTTTTTTC
          1 TTTTCCCTTCTTTCCTTTTTCTTTCTTTTC

                                          *
        421 TTTT-CCTTC-TTCCTTTTTCTTTCCTTTTT
          1 TTTTCCCTTCTTTCCTTTTTCTTT-CTTTTC

                
        450 TTTT
          1 TTTT

        454 TCTTGGGCCT


Statistics
Matches: 29,  Mismatches: 3, Indels: 3
        0.83            0.09        0.09

Matches are distributed among these distances:
  28   12  0.41
  29   13  0.45
  30    4  0.14

ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76


Consensus pattern (30 bp):   
TTTTCCCTTCTTTCCTTTTTCTTTCTTTTC
Done.