Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010228.1 Corchorus olitorius cultivar O-4 contig10260, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3340
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26


Found at i:824 original size:16 final size:16

Alignment explanation


    Indices: 805--843  Score: 53
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        795 GAGGTTGACA

                             
        805 AAAAGCAATTAAAC-AG
          1 AAAA-CAATTAAACTAG

                *           
        821 AAAATAATTAAACTAG
          1 AAAACAATTAAACTAG

                   
        837 AAAACAA
          1 AAAACAA

        844 AGCAAAGTAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  15    8  0.40
  16   12  0.60

ACGTcount: A:0.67, C:0.10, G:0.08, T:0.15


Consensus pattern (16 bp):   
AAAACAATTAAACTAG

Found at i:831 original size:15 final size:16

Alignment explanation


    Indices: 811--840  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        801 GACAAAAAGC

                            
        811 AATTAAAC-AGAAAAT
          1 AATTAAACTAGAAAAT

                           
        826 AATTAAACTAGAAAA
          1 AATTAAACTAGAAAA

        841 CAAAGCAAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    8  0.57
  16    6  0.43

ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20


Consensus pattern (16 bp):   
AATTAAACTAGAAAAT
Done.