Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010231.1 Corchorus olitorius cultivar O-4 contig10263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1150
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30


Found at i:653 original size:21 final size:21

Alignment explanation


    Indices: 629--678  Score: 75
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        619 TTGCCGCTGG

                                  
        629 GCGCCCAGGCGA-AATGCCTCA
          1 GCGCCCAGGCGACAA-GCCTCA

                            *    
        650 GCGCCCAGGCGACAAGGCTCA
          1 GCGCCCAGGCGACAAGCCTCA

                    
        671 GCGCCCAG
          1 GCGCCCAG

        679 TTCGATCCCT


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  21   25  0.93
  22    2  0.07

ACGTcount: A:0.22, C:0.40, G:0.32, T:0.06


Consensus pattern (21 bp):   
GCGCCCAGGCGACAAGCCTCA
Done.