Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010235.1 Corchorus olitorius cultivar O-4 contig10267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3133
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34


Found at i:1559 original size:2 final size:2

Alignment explanation


    Indices: 1552--1576  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1542 CATGTGCATT

                                                 
       1552 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       1577 GTATGTCATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:2809 original size:20 final size:20

Alignment explanation


    Indices: 2768--2810  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2758 CTCTCACAAG

                        *    *  
       2768 TTTCTAGCCGTTGGAGCTCT
          1 TTTCTAGCCGTTAGAGCACT

                         *      
       2788 TTTCTAGCCGTTATAGCACT
          1 TTTCTAGCCGTTAGAGCACT

               
       2808 TTT
          1 TTT

       2811 TCCACTTTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44


Consensus pattern (20 bp):   
TTTCTAGCCGTTAGAGCACT
Done.