Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010239.1 Corchorus olitorius cultivar O-4 contig10271, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3270
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3124 original size:21 final size:21

Alignment explanation


    Indices: 3098--3139  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3088 TCCTTTGGTG

                          *      
       3098 ATGATCTCCAATGGGCTTCAA
          1 ATGATCTCCAATGGCCTTCAA

                                 
       3119 ATGATCTCCAATGGCCTTCAA
          1 ATGATCTCCAATGGCCTTCAA

       3140 CTCGTCAAGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29


Consensus pattern (21 bp):   
ATGATCTCCAATGGCCTTCAA
Done.