Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010245.1 Corchorus olitorius cultivar O-4 contig10277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4162
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38


Found at i:1908 original size:21 final size:21

Alignment explanation


    Indices: 1882--1923  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1872 GTAAAGGATA

                    *            
       1882 TTACTAAATACCGCCCCCCTT
          1 TTACTAAACACCGCCCCCCTT

                  **             
       1903 TTACTAGCCACCGCCCCCCTT
          1 TTACTAAACACCGCCCCCCTT

       1924 GGACTATTTT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.19, C:0.48, G:0.07, T:0.26


Consensus pattern (21 bp):   
TTACTAAACACCGCCCCCCTT

Found at i:2327 original size:26 final size:28

Alignment explanation


    Indices: 2294--2352  Score: 77
    Period size: 30  Copynumber: 2.1  Consensus size: 28

       2284 ATCCAATATT

                                        
       2294 TTATTTTTT-A-AAATTATGAAAAGATA
          1 TTATTTTTTGAGAAATTATGAAAAGATA

                          *               
       2320 TTATTTTTTGAGGTTAATTATGAAAAGATA
          1 TTATTTTTTGA-G-AAATTATGAAAAGATA

               
       2350 TTA
          1 TTA

       2353 ATAATCTACT


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  26    9  0.32
  27    1  0.04
  30   18  0.64

ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47


Consensus pattern (28 bp):   
TTATTTTTTGAGAAATTATGAAAAGATA
Done.