Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010257.1 Corchorus olitorius cultivar O-4 contig10289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5021
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33


Found at i:1133 original size:1 final size:1

Alignment explanation


    Indices: 1095--1126  Score: 64
    Period size: 1  Copynumber: 32.0  Consensus size: 1

       1085 TACAATAGAG

                                            
       1095 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

       1127 GCAAAAACCC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   31  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A
Done.