Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010259.1 Corchorus olitorius cultivar O-4 contig10291, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1622
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31


Found at i:965 original size:34 final size:37

Alignment explanation


    Indices: 897--966  Score: 110
    Period size: 37  Copynumber: 1.9  Consensus size: 37

        887 GCTGCCTTGT

                                                  
        897 GCGCGGGCTGAGGCAGCAGCAGCGGCCTGCTGCTGCGC
          1 GCGCGGGCTGAGGCAGCAGCAGCGGCCT-CTGCTGCGC

                                               
        935 GCGCGGGCT-AGGCAGCAGCAGCGG-CT-TGCTGC
          1 GCGCGGGCTGAGGCAGCAGCAGCGGCCTCTGCTGC

        967 TTGGCGCGGT


Statistics
Matches: 32,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
  34    6  0.19
  36    2  0.06
  37   15  0.47
  38    9  0.28

ACGTcount: A:0.11, C:0.33, G:0.44, T:0.11


Consensus pattern (37 bp):   
GCGCGGGCTGAGGCAGCAGCAGCGGCCTCTGCTGCGC
Done.