Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010264.1 Corchorus olitorius cultivar O-4 contig10296, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:310 original size:105 final size:107

Alignment explanation


    Indices: 186--391  Score: 344
    Period size: 105  Copynumber: 1.9  Consensus size: 107

        176 ATTAAATCGA

                                               *                             
        186 AACAAGATTCAAATGCTCGTAAAACCAAATCGTTATATGCAAGGTGGCTAAGTTTTTATTAGA-A
          1 AACAAGATTCAAATGCTCGTAAAACCAAATCGTTAAATGCAAGGTGGCTAAGTTTTTATTAGAGA

                                                      
        250 A-TAGATATTTCAAGGAGTCTTGGCGCCAAAAATATTAGAGG
         66 ACTAGATATTTCAAGGAGTCTTGGCGCCAAAAATATTAGAGG

                                                      *        *             
        291 AACAAGATTCAAATGCTCGTAAAACCAAATCGTTAAATGCAATGTGGCTAATTTTTTATTAGATG
          1 AACAAGATTCAAATGCTCGTAAAACCAAATCGTTAAATGCAAGGTGGCTAAGTTTTTATTAGA-G

                 *                              
        356 AATCTTGATATTTCAAGGAGTCTTGGCGCCAAAAAT
         65 AA-CTAGATATTTCAAGGAGTCTTGGCGCCAAAAAT

        392 CATGCAAAAC


Statistics
Matches: 93,  Mismatches: 4, Indels: 4
        0.92            0.04        0.04

Matches are distributed among these distances:
 105   60  0.65
 107    2  0.02
 109   31  0.33

ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30


Consensus pattern (107 bp):   
AACAAGATTCAAATGCTCGTAAAACCAAATCGTTAAATGCAAGGTGGCTAAGTTTTTATTAGAGA
ACTAGATATTTCAAGGAGTCTTGGCGCCAAAAATATTAGAGG
Done.