Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010268.1 Corchorus olitorius cultivar O-4 contig10300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1899
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37


Found at i:670 original size:17 final size:18

Alignment explanation


    Indices: 648--681  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        638 TATAATTAAA

                              
        648 AAAATTCATAT-TTTCTT
          1 AAAATTCATATATTTCTT

                             
        665 AAAATTCATATATTTCT
          1 AAAATTCATATATTTCT

        682 ATTTTCCTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   11  0.69
  18    5  0.31

ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50


Consensus pattern (18 bp):   
AAAATTCATATATTTCTT
Done.