Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010272.1 Corchorus olitorius cultivar O-4 contig10304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2844
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41


Found at i:2231 original size:17 final size:17

Alignment explanation


    Indices: 2209--2242  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       2199 TATCCTCCTA

                             
       2209 AAAAAAAATGGTAACAT
          1 AAAAAAAATGGTAACAT

                             
       2226 AAAAAAAATGGTAACAT
          1 AAAAAAAATGGTAACAT

       2243 TTAGTTTTAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18


Consensus pattern (17 bp):   
AAAAAAAATGGTAACAT
Done.