Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010275.1 Corchorus olitorius cultivar O-4 contig10307, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2649
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31


Found at i:2604 original size:17 final size:17

Alignment explanation


    Indices: 2584--2619  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2574 AATAAGATCC

                  *  *       
       2584 AACAAATCATAAAAACA
          1 AACAAAACACAAAAACA

                             
       2601 AACAAAACACAAAAACA
          1 AACAAAACACAAAAACA

              
       2618 AA
          1 AA

       2620 ATAAAGTACA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.75, C:0.19, G:0.00, T:0.06


Consensus pattern (17 bp):   
AACAAAACACAAAAACA
Done.