Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010277.1 Corchorus olitorius cultivar O-4 contig10309, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1915
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:1517 original size:31 final size:30

Alignment explanation


    Indices: 1479--1579  Score: 105
    Period size: 31  Copynumber: 3.3  Consensus size: 30

       1469 AAGTACCTGA

                     *                     
       1479 TTAGTCCCTGTATTATAGAAAAAAGATCAAT
          1 TTAGTCCCTCTATTAT-GAAAAAAGATCAAT

                      *     *   ***       
       1510 TTAGTCCCTCCATTATCAAATCTG-TCAAT
          1 TTAGTCCCTCTATTATGAAAAAAGATCAAT

                        *         *        
       1539 TTAGTCCCTCTACTATTGAAAAGAGATCAAT
          1 TTAGTCCCTCTATTA-TGAAAAAAGATCAAT

                      
       1570 TTAGTCCCTC
          1 TTAGTCCCTC

       1580 CGTGAAATGG


Statistics
Matches: 56,  Mismatches: 12, Indels: 4
        0.78            0.17        0.06

Matches are distributed among these distances:
  29   18  0.32
  30    9  0.16
  31   29  0.52

ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35


Consensus pattern (30 bp):   
TTAGTCCCTCTATTATGAAAAAAGATCAAT
Done.