Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010278.1 Corchorus olitorius cultivar O-4 contig10310, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4366
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.37


Found at i:2087 original size:31 final size:31

Alignment explanation


    Indices: 2030--2088  Score: 75
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       2020 TTCGGCTCAT

                           * *             
       2030 CTGGATTCAGGTCATTCGGGTCTCGGGTCTG
          1 CTGGATTCAGGTCATGCAGGTCTCGGGTCTG

                   *                     
       2061 CTGGATTTAGGGTCATGCAGGT-TCGGGT
          1 CTGGATTCA-GGTCATGCAGGTCTCGGGT

       2089 TTTGGCCTCA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  31   14  0.58
  32   10  0.42

ACGTcount: A:0.12, C:0.19, G:0.37, T:0.32


Consensus pattern (31 bp):   
CTGGATTCAGGTCATGCAGGTCTCGGGTCTG

Found at i:2293 original size:21 final size:22

Alignment explanation


    Indices: 2269--2309  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       2259 GTTTATAATA

                *                 
       2269 TTCTTGGGTCA-TCGGGTTATC
          1 TTCTCGGGTCATTCGGGTTATC

                     *          
       2290 TTCTCGGGTTATTCGGGTTA
          1 TTCTCGGGTCATTCGGGTTA

       2310 CGAGTTTGTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    9  0.53
  22    8  0.47

ACGTcount: A:0.10, C:0.17, G:0.29, T:0.44


Consensus pattern (22 bp):   
TTCTCGGGTCATTCGGGTTATC
Done.