Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010287.1 Corchorus olitorius cultivar O-4 contig10319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2160
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Found at i:627 original size:334 final size:332
Alignment explanation
Indices: 4--1149 Score: 1373
Period size: 334 Copynumber: 3.4 Consensus size: 332
1 CAC
* *
4 CTACCCAAATCTCAGCAACAATGGATTTAAGTATATGTTTTTACGACCATCGGAATCTTGTTTCG
1 CTACCCAAATCTCAGCAACAATGGATTTAAGGATATGTTTTTACGAGCATCGGAATCTTGTTTCG
* * *
69 ATTTAATCAAAAATTAATTAGGAAAAACTTGGAAAAGTGACATTAGAAGCGTTAGAAGCCCTTGA
66 ATTTAATCAAAAATTAATTAGGAAAAACTTGGAAAAATGACATTAGAAGCGTTAAAAGCCCTTCA
*
134 ATCTTTTTTTTTTTTTGCGTTAAATTATATAAA--TTTTATGAGTATTTTGGCCAAAAATTGAGG
131 ATC-------TTTTTTGCGTTGAA-TATATAAATTTTTTATGAGTATTTTGGCCAAAAATTGAGG
* * *
197 TAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACGGTTTT
188 -AAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAAACATCACGGTTTT
*
262 TGGCGATAAA-CGCATTTCGGAGCCACGACTCAGTTTTGCTTGATTTTTGGCGCCAAAGATCCTT
252 TGGCGA-AAACCGCATTTCGGAGCCTCGACTCAGTTTTGCTTGATTTTTGGCGCCAAAGATCCTT
* *
326 GAAATATCTATATTAAT
316 GAAATATCCATATTCAT
* * * * *
343 CTACCCAAATCCCAGCCAA-AGTGGATTTAAGGATACGTTTTTACGAGCATCTGAATCTAGTTTC
1 CTACCCAAATCTCAG-CAACAATGGATTTAAGGATATGTTTTTACGAGCATCGGAATCTTGTTTC
* * **
407 GATTTAAAT-AGAAATTAATTAGGAAAAATAATTGGAAAAATGATTTTAGAAAG-GTTAAAAGCC
65 GATTT-AATCAAAAATTAATTAGG-AAAA-ACTTGGAAAAATGACATTAG-AAGCGTTAAAAGCC
* * *
470 CTTCAATCTTTTTTGTGTTGAATA-ATAAATTTTTTATGAGTATTTTGGACAAAAATAGAGGAAA
126 CTTCAATCTTTTTTGCGTTGAATATATAAATTTTTTATGAGTATTTTGGCCAAAAATTGAGGAAA
* * * * *
534 AATTTTCGGGTCAGTTTTCTTCAAAATTTAAGCCAAAATCGTATACTAAACATCACGGTTTTTGG
191 AATTTTCGGGTCAGTTTT-TGCAAAATTTTAGTCGAAATCGTGTACTAAACATCACGGTTTTTGG
* * *
599 CGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCTTGATTTTTGGCGCCAGAA-CTCATTGAA
255 CGAAAACCGCATTTCGGAGCCTCGACTCAGTTTTGCTTGATTTTTGGCGCCA-AAGATCCTTGAA
663 ATATCCATATTCAT
319 ATATCCATATTCAT
* * * * * * *
677 CAACCCAAATCTCAGCAACAATGGATTTAAAGATATATTTTTCCGAGCAACAGAATCTTGTTTCT
1 CTACCCAAATCTCAGCAACAATGGATTTAAGGATATGTTTTTACGAGCATCGGAATCTTGTTTCG
* * * * * *
742 ATTTAATTAGAAATTAATTAGGAAAAAATTTGCAAAAAATGATATTAGAAGCGTTAAAAGCCATT
66 ATTTAATCAAAAATTAATTAGG-AAAAACTTG-GAAAAATGACATTAGAAGCGTTAAAAGCCCTT
* * * **
807 CAATCTATTTTGCGTTGAA-ATATATATTTTTTATGAGTATTTTAGCCAAAAATTGACTAAAAAA
129 CAATCTTTTTTGCGTTGAATATATAAATTTTTTATGAGTATTTTGGCCAAAAATTGA-GGAAAAA
* * *
871 TTTTCGGATCAGTTTTTGCAAAATTTTAGTCGAAATCGTGTACT-AACTATCACGGTTTTTAGCT
193 TTTTCGGGTCAGTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAAAC-ATCACGGTTTTTGGCG
* * * * * * * *
935 TAAACTGCTTTTCCGAGCCTCGTCTCAGTTTTACAT-AGTTTTTGGCGCC-AAGACTCCTTCAAA
257 AAAACCGCATTTCGGAGCCTCGACTCAGTTTTGCTTGA-TTTTTGGCGCCAAAGA-TCCTTGAAA
998 TATCCCA-ATTCAT
320 TAT-CCATATTCAT
* * * *
1011 CTACCCAAATCTCAGCATCAATGCATTTAAGTATATGTTTTTACGAGCATCGGAATCTTGTTTTG
1 CTACCCAAATCTCAGCAACAATGGATTTAAGGATATGTTTTTACGAGCATCGGAATCTTGTTTCG
* * *
1076 ATTTAATCAAAAATTAATTAGGAAAAACTTGGAAAAGTGACATTAGAAGCGTTAGAAGCCCTTGA
66 ATTTAATCAAAAATTAATTAGGAAAAACTTGGAAAAATGACATTAGAAGCGTTAAAAGCCCTTCA
1141 ATCTTTTTT
131 ATCTTTTTT
1150 CAGGTAACCA
Statistics
Matches: 691, Mismatches: 95, Indels: 49
0.83 0.11 0.06
Matches are distributed among these distances:
332 43 0.06
333 50 0.07
334 457 0.66
335 25 0.04
339 71 0.10
340 10 0.01
341 32 0.05
342 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (332 bp):
CTACCCAAATCTCAGCAACAATGGATTTAAGGATATGTTTTTACGAGCATCGGAATCTTGTTTCG
ATTTAATCAAAAATTAATTAGGAAAAACTTGGAAAAATGACATTAGAAGCGTTAAAAGCCCTTCA
ATCTTTTTTGCGTTGAATATATAAATTTTTTATGAGTATTTTGGCCAAAAATTGAGGAAAAATTT
TCGGGTCAGTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAAACATCACGGTTTTTGGCGAAAA
CCGCATTTCGGAGCCTCGACTCAGTTTTGCTTGATTTTTGGCGCCAAAGATCCTTGAAATATCCA
TATTCAT
Found at i:1676 original size:574 final size:576
Alignment explanation
Indices: 584--1725 Score: 1485
Period size: 574 Copynumber: 2.0 Consensus size: 576
574 GTATACTAAA
* * ** *
584 CATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCTTGATTTTTGGCGC
1 CATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTGGCGC
* * *
649 CAGAACTCATTGAAATATCCATATTCATCAACCCAAATCTCAGCAACAATGGATTTAAAGATATA
66 CAGAAATCATTGAAATATCCATATTAATCAACCCAAATCCCAGCAACAATGGATTTAAAGATATA
* * * * *
714 TTTTTCCGAGCAACAGAATCTTGTTTCTATTTAATTAGAAATTAATTAGGAAAAAATTTGCAAAA
131 TTTTTACGAGCAACAGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAAAATTGCAAAA
*
779 AATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATATATTTTTTATGAG
196 AATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATAAATTTTTTATGAG
* * * * *
844 TATTTTAGCCAAAAATTGACTAAAAAATTTTCGGATCAGTTTTTGCAAAATTTTAGTCGAAATCG
261 TATTTTAGACAAAAATAGACGAAAAAATTTTCGGATCAGTTTTTGCAAAATTTTAGCCAAAATCG
* ** * * *
909 TGTACTAACTATCACGGTTTTTAGCTTAAACTGCTTTTCCGAGCCTCGTCTCAGTTTTACATAGT
326 TGTACTAACCATCACGGTTTTTAGCGAAAACCGCATTTCCGAGCCTCGACTCAGTTTTACATAGT
* * * *
974 TTTTGGCGCCAAGACTCCTTCAAATATCCCAATTCATCTACCCAAATCTCAGCATCAATGCATTT
391 TTTTGGAGCCAAGACTCATTCAAATATCCCAATTCATCAACCCAAATCTCAGCAACAATGCATTT
* * * *
1039 AAGTATATGTTTTTACGAGCATCGGAATCTTGTTTTGATTTAATCAAAAATTAATTAGG-AAAAA
456 AAGGATATGTTTTTACGAGCAACAGAATCTTGTTTCGATTTAATCAAAAATTAATTAGGAAAAAA
* * * * * *
1103 CTTG-GAAAAGTGACATTAGAAGCGTTAGAAGCCCTTGAATCTTTTTTCAGGTAAC
521 CTTGCAAAAAATGACATTAGAAGCGTTAAAAGCCATTCAATCTATTTTCAGGTAAC
1158 CATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTGGCGC
1 CATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTGGCGC
* * * * * *
1223 CA-AAGATCCTTGAAATATCTATATTAATCTACCCAACTCCCAGCCAA-AGTGGATTTAAGGATA
66 CAGAA-ATCATTGAAATATCCATATTAATCAACCCAAATCCCAG-CAACAATGGATTTAAAGATA
* * * *
1286 TGTTTTTACGAGCATCTGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAATAATTG-G
129 TATTTTTACGAGCAACAGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAA-AATTGCA
* * *
1350 AAAAATGATTTTAGAAAG-GTTAAAAGCCATTCAATCTTTTTTGCGTTGAATTATAAATTTTTTA
193 AAAAATGATATTAG-AAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATAAATTTTTTA
* * * *
1414 TGAGTATTTTGGACAAAAATAGA-GGAAAAATTTTCGGGTCAGTTTTCTTCAAAATTTTAGCCAA
257 TGAGTATTTTAGACAAAAATAGACGAAAAAATTTTCGGATCAGTTTT-TGCAAAATTTTAGCCAA
* * * *
1478 AATCGTGTACTAACCATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGC
321 AATCGTGTACTAACCATCACGGTTTTTAGCGAAAACCGCATTTCCGAGCCTCGACTCAGTTTTAC
* * * * *
1543 -TTGATTTTTGGAGTC-AGAACTCATTGAAATAT-CCATATTCTTCAACTCAAATCTCAGCAACA
386 ATAG-TTTTTGGAGCCAAG-ACTCATTCAAATATCCCA-ATTCATCAACCCAAATCTCAGCAACA
* * * * * *
1605 ATGGATTTAAGGATATTTTTTTCCGAGCAACAGAATCTTGTTTCGATTTAATTAGAAATTAATTT
448 ATGCATTTAAGGATATGTTTTTACGAGCAACAGAATCTTGTTTCGATTTAATCAAAAATTAATTA
* *
1670 GGAAAAAATTTGCAAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTT
513 GGAAAAAACTTGCAAAAAATGACATTAGAAGCGTTAAAAGCCATTCAATCTATTTT
1726 GCGTTGAAAT
Statistics
Matches: 485, Mismatches: 73, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
573 29 0.06
574 402 0.83
575 18 0.04
576 36 0.07
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (576 bp):
CATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTGGCGC
CAGAAATCATTGAAATATCCATATTAATCAACCCAAATCCCAGCAACAATGGATTTAAAGATATA
TTTTTACGAGCAACAGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAAAATTGCAAAA
AATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATAAATTTTTTATGAG
TATTTTAGACAAAAATAGACGAAAAAATTTTCGGATCAGTTTTTGCAAAATTTTAGCCAAAATCG
TGTACTAACCATCACGGTTTTTAGCGAAAACCGCATTTCCGAGCCTCGACTCAGTTTTACATAGT
TTTTGGAGCCAAGACTCATTCAAATATCCCAATTCATCAACCCAAATCTCAGCAACAATGCATTT
AAGGATATGTTTTTACGAGCAACAGAATCTTGTTTCGATTTAATCAAAAATTAATTAGGAAAAAA
CTTGCAAAAAATGACATTAGAAGCGTTAAAAGCCATTCAATCTATTTTCAGGTAAC
Found at i:1767 original size:334 final size:331
Alignment explanation
Indices: 1154--2160 Score: 1168
Period size: 334 Copynumber: 3.0 Consensus size: 331
1144 TTTTTTCAGG
* * *
1154 TAACCATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTG
1 TAACCATCACGGTTTTTGGCGAAAACCGCATTTCGGAGCCACGACTCAGTTTTGCTTGATTTTTG
* * * * * *
1219 GCGCCAAAGATCCTTGAAATATCTATATTAATCTACCCAACTCCCAGCCAA-AGTGGATTTAAGG
66 GCGCCAAA-CTCCTTGAAATATCCATATTCATCTACCCAAATCTCAG-CAACAATGGATTTAAGG
* * *
1283 ATATGTTTTTACGAGCATCTGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAATAATT
129 ATATGTTTTTACGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAAAAA-AATT
* * *
1348 GGAAAAATGATTTTAGAAAG-GTTAAAAGCCATTCAATCTTTTTTGCGTTGAATTATA-AATTTT
193 GGAAAAATGATATTAG-AAGCGTTAAAAGCCATTCAATCTTTTTTGCGTTGAAATATATTA-TTT
* *
1411 TTATGAGTATTTTGGACAAAAATAGAGGAAAAATTTTCGGGTCAGTTTTCTTCAAAATTTTAGCC
256 TTATGAGTATTTTGGCCAAAAATAGAGGAAAAATTTTCGGGTCAGTTTT-TGCAAAATTTTAGCC
1476 AAAATCGTGTAC
320 AAAATCGTGTAC
* *
1488 TAACCATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCTTGATTTTTG
1 TAACCATCACGGTTTTTGGCGAAAACCGCATTTCGGAGCCACGACTCAGTTTTGCTTGATTTTTG
* * * * * *
1553 GAGTCAGAACTCATTGAAATATCCATATTCTTCAACTCAAATCTCAGCAACAATGGATTTAAGGA
66 GCGCCA-AACTCCTTGAAATATCCATATTCATCTACCCAAATCTCAGCAACAATGGATTTAAGGA
* * * * *
1618 TATTTTTTTCCGAGCAACAGAATCTTGTTTCGATTTAATTAGAAATTAATTTGGAAAAAATTTGC
130 TATGTTTTTACGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAAAAAAATTG-
* *
1683 AAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATATTATTTTTA
194 GAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTTTTTTGCGTTGAAATATATTATTTTTA
** * ** ** * *
1748 TGAGTATTTTACCCAAAAATTGACTAAAAAATTTTCGAATCAGTTTTTGCAAAATTTTAGTCGAA
259 TGAGTATTTTGGCCAAAAATAGA-GGAAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGCCAAA
1813 ATCGTGTAC
323 ATCGTGTAC
* * * ** * * * ** *
1822 TAACTATCACAGTTTTTAGCTTAAACCGCTTTTCCGAGCCCCGTTTCAGTTTTGCAT-AGTTTTT
1 TAACCATCACGGTTTTTGGCGAAAACCGCATTTCGGAGCCACGACTCAGTTTTGCTTGA-TTTTT
* *
1886 GGCGCCAAGACTCCTTCAAATATCC-TAACTCATCTACCCAAATCTCAGCAACAATGGATTTAAG
65 GGCGCCAA-ACTCCTTGAAATATCCAT-ATTCATCTACCCAAATCTCAGCAACAATGGATTTAAG
* * * * *
1950 TATATGTTTTTACGAGCATCGGAATCTTGTTTCGATTTAATCAAAAATTAATTAGG-AAAAACTT
128 GATATGTTTTTACGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAAAAAAATT
* * *
2014 GGAAAAATGACATTAGAAGCGTTAGAAGCCCTTCAATCTTTTTTTATGCGTT-AAAT-TATTTAA
193 GGAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATC--TTTTT-TGCGTTGAAATATA-TT-A
* * *
2077 ATTTTATGATTATTTTGGCCAAAAA-ATGAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTT
253 TTTTTATGAGTATTTTGGCCAAAAATA-GAGGAAAAA-TTTTCGGGTCAGTTTTTGCAAAATTTT
**
2141 AGTCGTAAATCGTGTAC
316 AG-CCAAAATCGTGTAC
2158 TAA
1 TAA
Statistics
Matches: 568, Mismatches: 88, Indels: 32
0.83 0.13 0.05
Matches are distributed among these distances:
332 33 0.06
333 23 0.04
334 420 0.74
335 78 0.14
336 14 0.02
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (331 bp):
TAACCATCACGGTTTTTGGCGAAAACCGCATTTCGGAGCCACGACTCAGTTTTGCTTGATTTTTG
GCGCCAAACTCCTTGAAATATCCATATTCATCTACCCAAATCTCAGCAACAATGGATTTAAGGAT
ATGTTTTTACGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAAAAAAATTGGA
AAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTTTTTTGCGTTGAAATATATTATTTTTATG
AGTATTTTGGCCAAAAATAGAGGAAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGCCAAAATC
GTGTAC
Found at i:2000 original size:908 final size:908
Alignment explanation
Indices: 246--2057 Score: 3311
Period size: 908 Copynumber: 2.0 Consensus size: 908
236 AATCGTGTAC
* * *
246 TAACCATCACGGTTTTTGGCGATAAACGCATTTCGGAGCCACGACTCAGTTTTGCTTGATTTTTG
1 TAACCATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTG
311 GCGCCAAAGATCCTTGAAATATCTATATTAATCTACCCAAATCCCAGCCAAAGTGGATTTAAGGA
66 GCGCCAAAGATCCTTGAAATATCTATATTAATCTACCCAAATCCCAGCCAAAGTGGATTTAAGGA
376 TACGTTTTTACGAGCATCTGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAATAATTG
131 TACGTTTTTACGAGCATCTGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAATAATTG
* *
441 GAAAAATGATTTTAGAAAGGTTAAAAGCCCTTCAATCTTTTTTGTGTTGAATAATAAATTTTTTA
196 GAAAAATGATTTTAGAAAGGTTAAAAGCCATTCAATCTTTTTTGCGTTGAATAATAAATTTTTTA
506 TGAGTATTTTGGACAAAAATAGAGGAAAAATTTTCGGGTCAGTTTTCTTCAAAATTTAAGCCAAA
261 TGAGTATTTTGGACAAAAATAGAGGAAAAATTTTCGGGTCAGTTTTCTTCAAAATTTAAGCCAAA
571 ATCGTATACTAAACATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCT
326 ATCGTATACTAAACATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCT
*
636 TGATTTTTGGCGCCAGAACTCATTGAAATATCCATATTCATCAACCCAAATCTCAGCAACAATGG
391 TGATTTTTGGAGCCAGAACTCATTGAAATATCCATATTCATCAACCCAAATCTCAGCAACAATGG
*
701 ATTTAAAGATATATTTTTCCGAGCAACAGAATCTTGTTTCTATTTAATTAGAAATTAATTAGGAA
456 ATTTAAAGATATATTTTTCCGAGCAACAGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAA
766 AAAATTTGCAAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATA
521 AAAATTTGCAAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATA
* *
831 TATTTTTTATGAGTATTTTAGCCAAAAATTGACTAAAAAATTTTCGGATCAGTTTTTGCAAAATT
586 TATTTTTTATGAGTATTTTACCCAAAAATTGACTAAAAAATTTTCGAATCAGTTTTTGCAAAATT
* * *
896 TTAGTCGAAATCGTGTACTAACTATCACGGTTTTTAGCTTAAACTGCTTTTCCGAGCCTCGTCTC
651 TTAGTCGAAATCGTGTACTAACTATCACAGTTTTTAGCTTAAACCGCTTTTCCGAGCCCCGTCTC
*
961 AGTTTTACATAGTTTTTGGCGCCAAGACTCCTTCAAATATCCCAATTCATCTACCCAAATCTCAG
716 AGTTTTACATAGTTTTTGGCGCCAAGACTCCTTCAAATATCCCAACTCATCTACCCAAATCTCAG
* *
1026 CATCAATGCATTTAAGTATATGTTTTTACGAGCATCGGAATCTTGTTTTGATTTAATCAAAAATT
781 CAACAATGCATTTAAGTATATGTTTTTACGAGCATCGGAATCTTGTTTCGATTTAATCAAAAATT
* *
1091 AATTAGGAAAAACTTGGAAAAGTGACATTAGAAGCGTTAGAAGCCCTTGAATCTTTTTTCAGG
846 AATTAGGAAAAACTTGGAAAAATGACATTAGAAGCGTTAGAAGCCCTTCAATCTTTTTTCAGG
1154 TAACCATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTG
1 TAACCATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTG
*
1219 GCGCCAAAGATCCTTGAAATATCTATATTAATCTACCCAACTCCCAGCCAAAGTGGATTTAAGGA
66 GCGCCAAAGATCCTTGAAATATCTATATTAATCTACCCAAATCCCAGCCAAAGTGGATTTAAGGA
*
1284 TATGTTTTTACGAGCATCTGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAATAATTG
131 TACGTTTTTACGAGCATCTGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAATAATTG
*
1349 GAAAAATGATTTTAGAAAGGTTAAAAGCCATTCAATCTTTTTTGCGTTGAATTATAAATTTTTTA
196 GAAAAATGATTTTAGAAAGGTTAAAAGCCATTCAATCTTTTTTGCGTTGAATAATAAATTTTTTA
*
1414 TGAGTATTTTGGACAAAAATAGAGGAAAAATTTTCGGGTCAGTTTTCTTCAAAATTTTAGCCAAA
261 TGAGTATTTTGGACAAAAATAGAGGAAAAATTTTCGGGTCAGTTTTCTTCAAAATTTAAGCCAAA
* *
1479 ATCGTGTACTAACCATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCT
326 ATCGTATACTAAACATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCT
* * *
1544 TGATTTTTGGAGTCAGAACTCATTGAAATATCCATATTCTTCAACTCAAATCTCAGCAACAATGG
391 TGATTTTTGGAGCCAGAACTCATTGAAATATCCATATTCATCAACCCAAATCTCAGCAACAATGG
* * *
1609 ATTTAAGGATATTTTTTTCCGAGCAACAGAATCTTGTTTCGATTTAATTAGAAATTAATTTGGAA
456 ATTTAAAGATATATTTTTCCGAGCAACAGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAA
1674 AAAATTTGCAAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATA
521 AAAATTTGCAAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATA
1739 T-TATTTTTATGAGTATTTTACCCAAAAATTGACTAAAAAATTTTCGAATCAGTTTTTGCAAAAT
586 TAT-TTTTTATGAGTATTTTACCCAAAAATTGACTAAAAAATTTTCGAATCAGTTTTTGCAAAAT
*
1803 TTTAGTCGAAATCGTGTACTAACTATCACAGTTTTTAGCTTAAACCGCTTTTCCGAGCCCCGTTT
650 TTTAGTCGAAATCGTGTACTAACTATCACAGTTTTTAGCTTAAACCGCTTTTCCGAGCCCCGTCT
* *
1868 CAGTTTTGCATAGTTTTTGGCGCCAAGACTCCTTCAAATATCCTAACTCATCTACCCAAATCTCA
715 CAGTTTTACATAGTTTTTGGCGCCAAGACTCCTTCAAATATCCCAACTCATCTACCCAAATCTCA
*
1933 GCAACAATGGATTTAAGTATATGTTTTTACGAGCATCGGAATCTTGTTTCGATTTAATCAAAAAT
780 GCAACAATGCATTTAAGTATATGTTTTTACGAGCATCGGAATCTTGTTTCGATTTAATCAAAAAT
1998 TAATTAGGAAAAACTTGGAAAAATGACATTAGAAGCGTTAGAAGCCCTTCAATCTTTTTT
845 TAATTAGGAAAAACTTGGAAAAATGACATTAGAAGCGTTAGAAGCCCTTCAATCTTTTTT
2058 TATGCGTTAA
Statistics
Matches: 870, Mismatches: 33, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
907 1 0.00
908 869 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (908 bp):
TAACCATCACGGTTTTTGGCGAAAAACGCATTTCGGAGCCAAGACTCAGTTTTGCTTGACTTTTG
GCGCCAAAGATCCTTGAAATATCTATATTAATCTACCCAAATCCCAGCCAAAGTGGATTTAAGGA
TACGTTTTTACGAGCATCTGAATCTAGTTTCGATTTAAATAGAAATTAATTAGGAAAAATAATTG
GAAAAATGATTTTAGAAAGGTTAAAAGCCATTCAATCTTTTTTGCGTTGAATAATAAATTTTTTA
TGAGTATTTTGGACAAAAATAGAGGAAAAATTTTCGGGTCAGTTTTCTTCAAAATTTAAGCCAAA
ATCGTATACTAAACATCACGGTTTTTGGCGAAAACCGCATTTCGGAGTCTCGACTCAGTTTTGCT
TGATTTTTGGAGCCAGAACTCATTGAAATATCCATATTCATCAACCCAAATCTCAGCAACAATGG
ATTTAAAGATATATTTTTCCGAGCAACAGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAA
AAAATTTGCAAAAAATGATATTAGAAGCGTTAAAAGCCATTCAATCTATTTTGCGTTGAAATATA
TATTTTTTATGAGTATTTTACCCAAAAATTGACTAAAAAATTTTCGAATCAGTTTTTGCAAAATT
TTAGTCGAAATCGTGTACTAACTATCACAGTTTTTAGCTTAAACCGCTTTTCCGAGCCCCGTCTC
AGTTTTACATAGTTTTTGGCGCCAAGACTCCTTCAAATATCCCAACTCATCTACCCAAATCTCAG
CAACAATGCATTTAAGTATATGTTTTTACGAGCATCGGAATCTTGTTTCGATTTAATCAAAAATT
AATTAGGAAAAACTTGGAAAAATGACATTAGAAGCGTTAGAAGCCCTTCAATCTTTTTTCAGG
Done.