Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010290.1 Corchorus olitorius cultivar O-4 contig10322, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1818
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.39


Found at i:1603 original size:31 final size:31

Alignment explanation


    Indices: 1565--1624  Score: 84
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       1555 TATGTTTGAA

                     * *                   
       1565 AAATAAGGGTATAATAGACATTTCAAAAGGT
          1 AAATAAGGGCACAATAGACATTTCAAAAGGT

                             * *         
       1596 AAATAAGGGCACAATAGGCGTTTCAAAAG
          1 AAATAAGGGCACAATAGACATTTCAAAAG

       1625 TTTTACAAAA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  31   25  1.00

ACGTcount: A:0.47, C:0.10, G:0.22, T:0.22


Consensus pattern (31 bp):   
AAATAAGGGCACAATAGACATTTCAAAAGGT

Found at i:1780 original size:25 final size:23

Alignment explanation


    Indices: 1752--1806  Score: 56
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       1742 AACGACCGAC

                              *      
       1752 GACCCAACAAACTCGTAATCCGAAT
          1 GACCCAACAAACT--TAACCCGAAT

                 * *            *  
       1777 GACCCGAGAAACTTAACCCGGAT
          1 GACCCAACAAACTTAACCCGAAT

                   
       1800 GACCCAA
          1 GACCCAA

       1807 AGATATTATA


Statistics
Matches: 25,  Mismatches: 5, Indels: 2
        0.78            0.16        0.06

Matches are distributed among these distances:
  23   14  0.56
  25   11  0.44

ACGTcount: A:0.38, C:0.33, G:0.16, T:0.13


Consensus pattern (23 bp):   
GACCCAACAAACTTAACCCGAAT
Done.