Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010291.1 Corchorus olitorius cultivar O-4 contig10323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:609 original size:17 final size:17

Alignment explanation


    Indices: 563--617  Score: 74
    Period size: 17  Copynumber: 3.2  Consensus size: 17

        553 AACCCATGTA

                 *      *    
        563 ATCTTTGATCACCGGTG
          1 ATCTTAGATCACTGGTG

                  *          
        580 ATCTTACATCACTGGTG
          1 ATCTTAGATCACTGGTG

                         *   
        597 ATCTTAGATCACTAGTG
          1 ATCTTAGATCACTGGTG

                
        614 ATCT
          1 ATCT

        618 GGGGGGTGAT


Statistics
Matches: 33,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  17   33  1.00

ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36


Consensus pattern (17 bp):   
ATCTTAGATCACTGGTG
Done.