Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010293.1 Corchorus olitorius cultivar O-4 contig10325, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4256
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:3069 original size:11 final size:10

Alignment explanation


    Indices: 3053--3099  Score: 53
    Period size: 11  Copynumber: 4.7  Consensus size: 10

       3043 AAACTCGTGT

                       
       3053 TTGAAGACTCA
          1 TTGAAGA-TCA

                    * 
       3064 TTGAAGATAA
          1 TTGAAGATCA

                       
       3074 TTTGAAGAT--
          1 -TTGAAGATCA

                      
       3083 TTGAAGATCA
          1 TTGAAGATCA

                   
       3093 TTGAAGA
          1 TTGAAGA

       3100 ATTATTTCAA


Statistics
Matches: 32,  Mismatches: 1, Indels: 7
        0.80            0.03        0.17

Matches are distributed among these distances:
   8    8  0.25
  10    9  0.28
  11   15  0.47

ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32


Consensus pattern (10 bp):   
TTGAAGATCA

Found at i:3088 original size:19 final size:18

Alignment explanation


    Indices: 3064--3099  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       3054 TGAAGACTCA

                               
       3064 TTGAAGATAATTTGAAGAT
          1 TTGAAGATAA-TTGAAGAT

                    *        
       3083 TTGAAGATCATTGAAGA
          1 TTGAAGATAATTGAAGA

       3100 ATTATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAT
Done.