Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010294.1 Corchorus olitorius cultivar O-4 contig10326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2491
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.34
Found at i:1228 original size:563 final size:551
Alignment explanation
Indices: 2--1162 Score: 1397
Period size: 563 Copynumber: 2.1 Consensus size: 551
1 T
* * * * **
2 ATATATATATTTCAAGGATTATTTACGTCAAAAATCATGCAAAAAC--AAAAAAATATTTTCGGC
1 ATATAGATATTTCAAGGAATATTGACGCCAAAAATCATGCAAAAACAAAAAAAAATATGATCGG-
* * * *
65 AAAAAATACACAATTCAACGCAAAAAAAAAAATTGAAATATTTTTCTCGCTTTAAATATCATTTT
65 -AATAATACACAATTTAACTC--AAAAAAAAATGGAAATATTTTTCTCGCTTTAAATATCATTTT
* * *
130 TCTATTTTTTTTCCGAATCTATTTCTAATTAAATCGGAACAATATTCAGATGCTCGTAAAAATAA
127 TCTATTTTTTTTCCGAATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGAAAAAACAA
* * * *
195 ATCCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTCTGCG
192 ATCCTTAAATCCAATGTGGCTGACAATTGGTTAGATGAATATAGATATTACAAGGAGTCTCTGCG
* * * * * * * * **
260 CCAAAAATCATGCAAAATTGAGTCGGGGCTTGGGAATGAGTTTTTAGCCAGAAACTGTGATGGTT
257 ACAAAAATCATACAAAACTGAGCCGGGGCCTGGAAACGAGTTTTTAGCCAAAAACAATGATGGTT
* *
325 AGTACACGGTTTCGGCTAAAAACTGATCTGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA
322 AGTACACGGTTTCAGCTAAAAACTGACCTGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA
* *
390 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGTTTTTCACGCTTTTAATATCGTTTTTC
387 GAAAAAATATATAATTCAACACCAAAAAGATTGACGGGTTTTTCACGCTTTTAATATCATTTTTC
* * *
455 CATTTATTTTCCGAATTAATTTTTAATAAAATTGAAAAAGATTAAGATACTCGTAAAAGCAAATA
452 CATTTATTTTCCGAATTAATTTCTAATAAAATCGAAAAAGATTAAGATACTCGTAAAAACAAATA
* ** * **
520 CTTAAATCGAACGTGGCTGTGATTTTGTTTGATTT
517 CTTAAATCCAACGTGGCTGACATTTGGTTTGATGA
* * * * **
555 ATATATATATTTCAAGGATTATTTACGTCAAAAATCATGCAAAAACAAAAAAAAATATTTTCGGC
1 ATATAGATATTTCAAGGAATATTGACGCCAAAAATCATGCAAAAACAAAAAAAAATATGATCGG-
*
620 AAATAATACACAATTTAACTCAAAAAAAAATTGAAATATTTTTCTCGCTTTAAATATCATTTTTC
65 -AATAATACACAATTTAACTCAAAAAAAAATGGAAATATTTTTCTCGCTTTAAATATCATTTTTC
685 TA-TTTTTTTCCGAATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGAAAAAACAAAT
129 TATTTTTTTTCCGAATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGAAAAAACAAAT
* * *
749 CCTTAAATCTAATGTTGCTGAGAGCCTGAGATTGGTTAGATGAATCTAGATATTACAAGGAGTCT
194 CCTTAAATCCAATGTGGCT--GA--C--A-ATTGGTTAGATGAATATAGATATTACAAGGAGTCT
* * *
814 -TTCTGATAAAAA-CTATACAAAACTGAGCCGGGGCCCCT-GAAACGCGTTTTTAGTCCAAAAAC
252 CTGC-GACAAAAATC-ATACAAAACTGAGCCGGGG--CCTGGAAACGAGTTTTTAG-CCAAAAAC
* * * * *
876 AATGATGGTTAGTACACGATTTTCAGCTAAAATCTGACCCT-ATTAATTTTTTTCTGAATTTTTT
312 AATGATGGTTAGTACACG-GTTTCAGCTAAAAACTGA-CCTGA-AAAGTTTTTTCTCAATTTTTT
* * *
940 GTCACAATACTCAGAAAAAATATTTAATTCAACACCAAAAAGATTGA-TGGTCTTTTCACGCTTT
374 GCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGACGGGT-TTTTCACGCTTT
* * * *
1004 TAATATCATTTTTCCAATTT-TTTTCCGAATTAATTTCTAATTAAATCGAAACAATATTCAGATG
438 TAATATCATTTTTCC-ATTTATTTTCCGAATTAATTTCTAATAAAATCGAAA-AAGATTAAGATA
* * * *
1068 CTCGTAAAAACAATTCCTTATATCCAATGTGGCTGACATTTGGTTTGATGA
501 CTCGTAAAAACAAATACTTAAATCCAACGTGGCTGACATTTGGTTTGATGA
*
1119 ATATAGATATTTCAAGGAATCTCTGA-GCCAAAAATCATGCAAAA
1 ATATAGATATTTCAAGGAATAT-TGACGCCAAAAATCATGCAAAA
1163 TTTAGGAAAA
Statistics
Matches: 527, Mismatches: 60, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
552 75 0.14
553 92 0.17
554 2 0.00
555 35 0.07
556 1 0.00
558 4 0.01
559 53 0.10
560 12 0.02
561 25 0.05
562 19 0.04
563 118 0.22
564 89 0.17
565 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (551 bp):
ATATAGATATTTCAAGGAATATTGACGCCAAAAATCATGCAAAAACAAAAAAAAATATGATCGGA
ATAATACACAATTTAACTCAAAAAAAAATGGAAATATTTTTCTCGCTTTAAATATCATTTTTCTA
TTTTTTTTCCGAATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGAAAAAACAAATCC
TTAAATCCAATGTGGCTGACAATTGGTTAGATGAATATAGATATTACAAGGAGTCTCTGCGACAA
AAATCATACAAAACTGAGCCGGGGCCTGGAAACGAGTTTTTAGCCAAAAACAATGATGGTTAGTA
CACGGTTTCAGCTAAAAACTGACCTGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAA
AAATATATAATTCAACACCAAAAAGATTGACGGGTTTTTCACGCTTTTAATATCATTTTTCCATT
TATTTTCCGAATTAATTTCTAATAAAATCGAAAAAGATTAAGATACTCGTAAAAACAAATACTTA
AATCCAACGTGGCTGACATTTGGTTTGATGA
Found at i:1451 original size:298 final size:299
Alignment explanation
Indices: 878--1460 Score: 778
Period size: 298 Copynumber: 2.0 Consensus size: 299
868 CCAAAAACAA
* * * * * *
878 TGATGGTTAGTACACGATTTTCAGCTAAAATCTGACCCTATTAATTTTTTTCTGAATTTTTTGTC
1 TGATGGTTAGTACACGATTTTCAGCTAAAAACTGACCCGATAAAGTTTTTTCTCAATTTTTTGCC
* * * * *
943 ACAATACTCAGAAAAAATATTTAATTCAACACCAAAAAGATTGATGGTCTTTTCACGCTTTTAAT
66 ACAATACTCAGAAAAAATATATAACTCAACACCAAAAAGATTGACGGGCTTTTCACGCTTCTAAT
* * * * * *
1008 ATCATTTTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAATATTCAGATGCTCGT
131 ATCACTTTTCCAATTTTTTTCCGAATTAATTTCTAATAAAATCGAAAAAAGATTAAGATACTCGT
* * * * *
1073 AAAAACAATTCCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGAA
196 AAAAACAAATACTTAAATCCAACGTGGCTGACATTTGGTTTGAAGAATATAGATATTTCAAGGAA
*
1138 TCTCTGAGCCAAAAATCATGCAAAATTTAGGAAAAACTG
261 TATCTGAGCCAAAAATCATGCAAAATTTAGGAAAAACTG
* * *
1177 TGATGGTTAGTACACGA-TTTCGGCTAAAAACTGATCGGA-AAAGTTTTTTCTCAATTTTTTTGC
1 TGATGGTTAGTACACGATTTTCAGCTAAAAACTGACCCGATAAAGTTTTTTCTCAA-TTTTTTGC
*
1240 CACAATACTCAGAAAAAATATATAACTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAA
65 CACAATACTCAGAAAAAATATATAACTCAACACCAAAAAGATTGACGGGCTTTTCACGCTTCTAA
* * *
1305 TATCGCTTTTCC-ATTTATTTTCCGAATTAATTTTTAATAAAATTGAAAAAAGATTAAGATACTC
130 TATCACTTTTCCAATTT-TTTTCCGAATTAATTTCTAATAAAATCGAAAAAAGATTAAGATACTC
* * * *
1369 GTAAAAACAAATACTTAAATCGAACGTGGCTGAGATTTTGTTTGAAGAATATTGATATTTCAAGG
194 GTAAAAACAAATACTTAAATCCAACGTGGCTGACATTTGGTTTGAAGAATATAGATATTTCAAGG
* * *
1434 AGTAT-TTACGTCAAAAATCATGCAAAA
259 AATATCTGA-GCCAAAAATCATGCAAAA
1461 AAAAAAATTT
Statistics
Matches: 244, Mismatches: 37, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
297 18 0.07
298 209 0.86
299 17 0.07
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (299 bp):
TGATGGTTAGTACACGATTTTCAGCTAAAAACTGACCCGATAAAGTTTTTTCTCAATTTTTTGCC
ACAATACTCAGAAAAAATATATAACTCAACACCAAAAAGATTGACGGGCTTTTCACGCTTCTAAT
ATCACTTTTCCAATTTTTTTCCGAATTAATTTCTAATAAAATCGAAAAAAGATTAAGATACTCGT
AAAAACAAATACTTAAATCCAACGTGGCTGACATTTGGTTTGAAGAATATAGATATTTCAAGGAA
TATCTGAGCCAAAAATCATGCAAAATTTAGGAAAAACTG
Found at i:2155 original size:321 final size:318
Alignment explanation
Indices: 1562--2337 Score: 857
Period size: 321 Copynumber: 2.4 Consensus size: 318
1552 TTCCGAATCT
* * *
1562 ATTTGTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGC
1 ATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATACTTAAATCCAATGTGGC
* * * * * * * *
1627 TGAGAGCCTGAGATTGGTTAGATGAATCTAGATATTACAAGGATTCTTTCTGCCAAAAATGATAC
66 T--GA--C--A-TTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTAC-GCCAAAAATCATGC
* *
1692 AAAACTGAGCCGGGGCCCCTGAAATGCGTTTTTAGTCCAAAAATGATAACGTACACGATTTCCGG
123 AAAACTGAGCCGGGGCCCCGGAAACGCGTTTTTAGTCCAAAAATGATAACGTACACGATTTCCGG
**
1757 CAAAAATCTGACCAGGAATTTTTTTCAGAATTTTTTACCACAATACTCAGAAAAAATATATAATT
188 CAAAAATCTGACCAAAAATTTTTTTCA-AATTTTTTACCACAATACTCAGAAAAAATATATAATT
* * * * * *
1822 CAACACCAAAAAGATTGATGGTCTTCTCACGCTTTTAATATCATTTTTCCAATTT-TTTTATGAA
252 CAACACCAAAAAGATTGACGGGCTTCTCACGATTCTAATATCACTTTTCC-ATTTATTTTACGAA
1886 TTA
316 TTA
* *
1889 ATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAAC-AATTCTTATATCCAATGTGGC
1 ATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATACTTAAATCCAATGTGGC
* * *
1953 TGACATTTGGTTTGATGAATATAGATATTTGAAGGAGTCTCTGCGCCAAAAATCATGCAAAATTG
66 TGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCT-TACGCCAAAAATCATGCAAAACTG
* * * *
2018 AGTCGGGG-CTCGGGAACGCGTTTTTAG-CCAAAAACTGTGATGGTTA-GTACACGATTT-CGGC
130 AGCCGGGGCCCCGGAAACGCGTTTTTAGTCCAAAAA---TGA---TAACGTACACGATTTCCGGC
* *
2079 TAAAAA-CTGATCGAAAAAGTTTTTTTC-AATTTTTTGCCACAATACTCAGAAAAAATATATAAT
189 -AAAAATCTGA-CCAAAAA-TTTTTTTCAAATTTTTTACCACAATACTCAGAAAAAATATATAAT
* * *
2142 TCAACACCAAAAAGATTGACGGGCTTTTCACGATTCTAATATCGCTTTTCCATTTATTTTCCGAA
251 TCAACACCAAAAAGATTGACGGGCTTCTCACGATTCTAATATCACTTTTCCATTTATTTTACGAA
2207 TTA
316 TTA
* * * * * * *
2210 ATTTTTAATTAAATTTGAAAAAAGATTAAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGG
1 ATTTCTAATTAAA-TCGAAACAATATTCAGATGCTCGTAAAAACAAATACTTAAATCCAATGTGG
** * ** * *
2275 CTGGGATTTTGTTTGAAAAATATAGATATTTCAAGGAGTATTTACGTCAAAAATCATGCAAAA
65 CTGACATTTGGTTTGATGAATATAGATATTTCAAGGAGT-CTTACGCCAAAAATCATGCAAAA
2338 ACAAAAAAAA
Statistics
Matches: 384, Mismatches: 51, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
317 7 0.02
318 15 0.04
319 54 0.14
320 10 0.03
321 109 0.28
322 47 0.12
323 78 0.20
324 3 0.01
326 19 0.05
327 42 0.11
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (318 bp):
ATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATACTTAAATCCAATGTGGC
TGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTACGCCAAAAATCATGCAAAACTGA
GCCGGGGCCCCGGAAACGCGTTTTTAGTCCAAAAATGATAACGTACACGATTTCCGGCAAAAATC
TGACCAAAAATTTTTTTCAAATTTTTTACCACAATACTCAGAAAAAATATATAATTCAACACCAA
AAAGATTGACGGGCTTCTCACGATTCTAATATCACTTTTCCATTTATTTTACGAATTA
Found at i:2363 original size:860 final size:862
Alignment explanation
Indices: 112--2491 Score: 3388
Period size: 860 Copynumber: 2.7 Consensus size: 862
102 ATATTTTTCT
* * * *
112 CGCTTTAAATATCATTTTTCTATTTTTTTTCCGAATCT-ATTTCTAATTAAATCGGAACAATATT
1 CGCTTTTAATATCATTTTTCCAATTTTTTTCCGAAT-TAATTTCTAATTAAATCGAAACAATATT
* *
176 CAGATGCTCGTAAAAATAAATCCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGAT
65 CAGATGCTCGTAAAAA-CAATTCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGAT
241 ATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTTGGGAATGAGTTTTTA
129 ATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAATTGAGTCGGGGC-TGGGAA-G-GTTTTTA
* *
306 GCCAGAAACTGTGATGGTTAGTACACGGTTTCGGCTAAAAACTGATCTGAAAAGTTTTTTCTCAA
191 GCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGATC-GAAAAGTTTTTTCTCAA
*
371 TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGTTTTTCAC
255 TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCAC
* *
436 GCTTTTAATATCGTTTTTCCATTTATTTTCCGAATTAATTTTTAATAAAATTG-AAAAAGATTAA
320 GCTTCTAATATCGCTTTTCCATTTATTTTCCGAATTAATTTTTAATAAAATTGAAAAAAGATTAA
* * *** *
500 GATACTCGTAAAAGCAAATACTTAAATCGAACGTGGCTGTGATTTTGTTTGATTTATATATATAT
385 GATACTCGTAAAAACAAATACTTAAATCGAACGTGGCTGAGATTTTGTTTGAAAAATATAGATAT
*
565 TTCAAGGATTATTTACGTCAAAAATCATGCAAAAACAAAAAAAAATATTTTCGGCAAATAATACA
450 TTCAAGGAGTATTTACGTCAAAAATCATGCAAAAAC-AAAAAAAATATTTTCGG-----------
630 CAATTTAACTCAAAAAAAAATTGAAATATTTTTCTCGCTTTAAATATCATTTTTCTATTTTTTTC
503 -AA--TAA--CAAAAAAAAATTGAAATATTTTTCTCGCTTTAAATATCATTTTTCTATTTTTTTC
*
695 CGAATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGAAAAAACAAATCCTTAAATCTA
563 CGAATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTA
* *
760 ATGTTGCTGAGAGCCTGAGATTGGTTAGATGAATCTAGATATTACAAGGAGTCTTTCTGATAAAA
628 ATGTGGCTGAGAGCCTGAGATTGGTTAGATGAATCTAGATATTACAAGGAGTCTTTCTGACAAAA
*
825 ACTATACAAAACTGAGCCGGGGCCCCTGAAACGCGTTTTTAGTCCAAAAACAATGATGGTTAGTA
693 ACTATACAAAACTGAGCCGGGGCCCCTGAAACGCGTTTTTAGTCC-AAAACAATGA--GTAAGTA
* * ** * **
890 CACGATTTTCAGCTAAAATCTGACCCTATTAATTTTTTTCTGAATTTTTTGTCACAATACTCAGA
755 CACGATTTCCAGCAAAAATCTGACCCTAGGAATTTTTTTCAGAATTTTTTACCACAATACTCAGA
* *
955 AAAAATATTTAATTCAACACCAAAAAGATTGATGGTCTTTTCA
820 AAAAATATATAATTCAACACCAAAAAGATTGATGGTCTTCTCA
998 CGCTTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAATATTC
1 CGCTTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAATATTC
1063 AGATGCTCGTAAAAACAATTCCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATA
66 AGATGCTCGTAAAAACAATT-CTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATA
* *
1128 TTTCAAGGAATCTCTGAGCCAAAAATCATGCAAAA-T---T------T----A-G------G--A
130 TTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTGGGAAGGTTTTTAGCCA
1170 AAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGATCGGAAAAGTTTTTTCTCAATTTT
195 AAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGATC-GAAAAGTTTTTTCTCAA-TTT
*
1235 TTTGCCACAATACTCAGAAAAAATATATAACTCAACGCCAAAAAGATTGACGGGCTTTTCACGCT
258 TTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCT
1300 TCTAATATCGCTTTTCCATTTATTTTCCGAATTAATTTTTAATAAAATTGAAAAAAGATTAAGAT
323 TCTAATATCGCTTTTCCATTTATTTTCCGAATTAATTTTTAATAAAATTGAAAAAAGATTAAGAT
* *
1365 ACTCGTAAAAACAAATACTTAAATCGAACGTGGCTGAGATTTTGTTTGAAGAATATTGATATTTC
388 ACTCGTAAAAACAAATACTTAAATCGAACGTGGCTGAGATTTTGTTTGAAAAATATAGATATTTC
* **
1430 AAGGAGTATTTACGTCAAAAATCATGCAAAAAAAAAAATTTCGGCAAAAAATGCACAATTCAACG
453 AAGGAGTATTTACGTCAAAAATCATGC---AAAAACAA-------AAAAAAT-----ATT-TTCG
* * *
1495 CAA-AA-AAAAAAAAATTGAAATATTTTTCTCGCTTTAAATATAATTTTTTCTATCTTTTTCCGA
502 GAATAACAAAAAAAAATTGAAATATTTTTCTCGCTTTAAATATCA-TTTTTCTATTTTTTTCCGA
*
1558 ATCTATTTGTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATG
566 ATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATG
* *
1623 TGGCTGAGAGCCTGAGATTGGTTAGATGAATCTAGATATTACAAGGATTCTTTCTGCCAAAAA-T
631 TGGCTGAGAGCCTGAGATTGGTTAGATGAATCTAGATATTACAAGGAGTCTTTCTGACAAAAACT
*
1687 GATACAAAACTGAGCCGGGGCCCCTGAAATGCGTTTTTAGTCC-AAA-AATGA-TAACGTACACG
696 -ATACAAAACTGAGCCGGGGCCCCTGAAACGCGTTTTTAGTCCAAAACAATGAGTAA-GTACACG
*
1749 ATTTCCGGCAAAAATCTGA-CC-AGGAATTTTTTTCAGAATTTTTTACCACAATACTCAGAAAAA
759 ATTTCCAGCAAAAATCTGACCCTAGGAATTTTTTTCAGAATTTTTTACCACAATACTCAGAAAAA
1812 ATATATAATTCAACACCAAAAAGATTGATGGTCTTCTCA
824 ATATATAATTCAACACCAAAAAGATTGATGGTCTTCTCA
**
1851 CGCTTTTAATATCATTTTTCCAATTTTTTTATGAATTAATTTCTAATTAAATCGAAACAATATTC
1 CGCTTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAATATTC
1916 AGATGCTCGTAAAAACAATTCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATAT
66 AGATGCTCGTAAAAACAATTCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATAT
*
1981 TTGAAGGAGTCTCTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCGGGAACGCGTTTTTAGC
131 TTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCT-GGGAA-G-GTTTTTAGC
2046 CAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGATCGAAAAAGTTTTTT-TCAATT
193 CAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGATCG-AAAAGTTTTTTCTCAATT
* *
2110 TTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGACGGGCTTTTCACGA
257 TTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGC
*
2175 TTCTAATATCGCTTTTCCATTTATTTTCCGAATTAATTTTTAATTAAATTTGAAAAAAGATTAAG
322 TTCTAATATCGCTTTTCCATTTATTTTCCGAATTAATTTTTAA-TAAAATTGAAAAAAGATTAAG
* *
2240 ATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTGTTTGAAAAATATAGATATT
386 ATACTCGTAAAAACAAATACTTAAATCGAACGTGGCTGAGATTTTGTTTGAAAAATATAGATATT
2305 TCAAGGAGTATTTACGTCAAAAATCATGCAAAAACAAAAAAAATATTTTCGGAAAAAAATACACA
451 TCAAGGAGTATTTACGTCAAAAATCATGCAAAAACAAAAAAAATATTTTCGG-----AAT----A
2370 ATTCAGCGCGAAAAAAAATTGAAATATTTTTCTCGCTTTAAATATCATTTTTCTATTTTTTTCCG
507 A--CA-----AAAAAAAATTGAAATATTTTTCTCGCTTTAAATATCATTTTTCTATTTTTTTCCG
* *
2435 AAACTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAATCAAATCCTTA
565 AATCTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTA
Statistics
Matches: 1356, Mismatches: 69, Indels: 146
0.86 0.04 0.09
Matches are distributed among these distances:
852 76 0.06
853 158 0.12
854 4 0.00
855 23 0.02
856 1 0.00
857 5 0.00
858 3 0.00
859 38 0.03
860 240 0.18
861 116 0.09
862 105 0.08
864 2 0.00
865 7 0.01
866 2 0.00
867 8 0.01
868 1 0.00
870 1 0.00
871 10 0.01
874 8 0.01
875 1 0.00
876 111 0.08
877 117 0.09
878 126 0.09
879 36 0.03
882 1 0.00
885 5 0.00
886 151 0.11
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (862 bp):
CGCTTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAATATTC
AGATGCTCGTAAAAACAATTCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATAT
TTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTGGGAAGGTTTTTAGCCAA
AAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGATCGAAAAGTTTTTTCTCAATTTTTT
GCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
AATATCGCTTTTCCATTTATTTTCCGAATTAATTTTTAATAAAATTGAAAAAAGATTAAGATACT
CGTAAAAACAAATACTTAAATCGAACGTGGCTGAGATTTTGTTTGAAAAATATAGATATTTCAAG
GAGTATTTACGTCAAAAATCATGCAAAAACAAAAAAAATATTTTCGGAATAACAAAAAAAAATTG
AAATATTTTTCTCGCTTTAAATATCATTTTTCTATTTTTTTCCGAATCTATTTCTAATTAAATCG
AAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTG
GTTAGATGAATCTAGATATTACAAGGAGTCTTTCTGACAAAAACTATACAAAACTGAGCCGGGGC
CCCTGAAACGCGTTTTTAGTCCAAAACAATGAGTAAGTACACGATTTCCAGCAAAAATCTGACCC
TAGGAATTTTTTTCAGAATTTTTTACCACAATACTCAGAAAAAATATATAATTCAACACCAAAAA
GATTGATGGTCTTCTCA
Done.