Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010295.1 Corchorus olitorius cultivar O-4 contig10327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3864
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:864 original size:13 final size:13

Alignment explanation


    Indices: 846--877  Score: 55
    Period size: 13  Copynumber: 2.5  Consensus size: 13

        836 TGATCAATTT

                         
        846 GTAATTTTTTTCA
          1 GTAATTTTTTTCA

                         
        859 GTAATTTTTTTCA
          1 GTAATTTTTTTCA

            *     
        872 CTAATT
          1 GTAATT

        878 ACTTTCTATG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.25, C:0.09, G:0.06, T:0.59


Consensus pattern (13 bp):   
GTAATTTTTTTCA
Done.