Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010296.1 Corchorus olitorius cultivar O-4 contig10328, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2048
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29


Found at i:1846 original size:34 final size:34

Alignment explanation


    Indices: 1803--1929  Score: 218
    Period size: 34  Copynumber: 3.7  Consensus size: 34

       1793 GGCCAGCAGG

                                          *   
       1803 CACGAAGGTACACGAGAAGACACAGGAAGAGAGA
          1 CACGAAGGTACACGAGAAGACACAGGAAGACAGA

                                  *   *       
       1837 CACGAAGGTACACGAGAAGACAGAGGGAGACAGA
          1 CACGAAGGTACACGAGAAGACACAGGAAGACAGA

                                  *           
       1871 CACGAAGGTACACGAGAAGACAGAGGAAGACAGA
          1 CACGAAGGTACACGAGAAGACACAGGAAGACAGA

                                     
       1905 CACGAAGGTACACGAGAAGACACAG
          1 CACGAAGGTACACGAGAAGACACAG

       1930 TGGTGCTCCA


Statistics
Matches: 88,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  34   88  1.00

ACGTcount: A:0.46, C:0.19, G:0.32, T:0.03


Consensus pattern (34 bp):   
CACGAAGGTACACGAGAAGACACAGGAAGACAGA
Done.