Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010298.1 Corchorus olitorius cultivar O-4 contig10330, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6269
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:438 original size:3 final size:3

Alignment explanation


    Indices: 430--474  Score: 90
    Period size: 3  Copynumber: 15.0  Consensus size: 3

        420 ATATATATAT

                                                                       
        430 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

        475 TTTAAGAAAT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   42  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Found at i:550 original size:15 final size:15

Alignment explanation


    Indices: 509--551  Score: 50
    Period size: 15  Copynumber: 2.8  Consensus size: 15

        499 AAGTTTTAAC

                            
        509 AAAACAATAAAGATGA
          1 AAAACAA-AAAGATGA

                  *        
        525 AAAACAGAAAGATGA
          1 AAAACAAAAAGATGA

             *  *       
        540 AGAATAAAAAGA
          1 AAAACAAAAAGA

        552 AGCAAAACGT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  15   17  0.74
  16    6  0.26

ACGTcount: A:0.70, C:0.05, G:0.16, T:0.09


Consensus pattern (15 bp):   
AAAACAAAAAGATGA
Done.