Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010304.1 Corchorus olitorius cultivar O-4 contig10336, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10437
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:3521 original size:20 final size:20

Alignment explanation


    Indices: 3498--3538  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       3488 AGCAAAATAG

                                
       3498 TTCTAATATAATTTTCTTAT
          1 TTCTAATATAATTTTCTTAT

                                
       3518 TTCTAATATAATTTTCTTAT
          1 TTCTAATATAATTTTCTTAT

             
       3538 T
          1 T

       3539 ACGTCAGACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61


Consensus pattern (20 bp):   
TTCTAATATAATTTTCTTAT
Done.