Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010307.1 Corchorus olitorius cultivar O-4 contig10339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4878
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:4496 original size:21 final size:22

Alignment explanation


    Indices: 4449--4506  Score: 82
    Period size: 21  Copynumber: 2.7  Consensus size: 22

       4439 TTATTTTTAT

                          *      *
       4449 GAAATTTTGATAACTACCCTAT
          1 GAAATTTTGATAACCACCCTAC

            *                     
       4471 TAAATTTTGATAACCA-CCTAC
          1 GAAATTTTGATAACCACCCTAC

                           
       4492 GAAATTTTGATAACC
          1 GAAATTTTGATAACC

       4507 TAATTATGAA


Statistics
Matches: 32,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  21   18  0.56
  22   14  0.44

ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34


Consensus pattern (22 bp):   
GAAATTTTGATAACCACCCTAC
Done.