Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010313.1 Corchorus olitorius cultivar O-4 contig10345, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36


Found at i:926 original size:20 final size:21

Alignment explanation


    Indices: 887--927  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        877 TAGGGCTAGC

                         *       
        887 ATTTAATAATATATTTAGATT
          1 ATTTAATAATATAATTAGATT

                      *          
        908 ATTTAAT-ATTTAATTAGATT
          1 ATTTAATAATATAATTAGATT

        928 TAGATTTAAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20   11  0.61
  21    7  0.39

ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54


Consensus pattern (21 bp):   
ATTTAATAATATAATTAGATT
Done.