Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010323.1 Corchorus olitorius cultivar O-4 contig10355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1977
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26


Found at i:1478 original size:33 final size:33

Alignment explanation


    Indices: 1433--1506  Score: 96
    Period size: 33  Copynumber: 2.3  Consensus size: 33

       1423 TAGGCTTGAA

                 *                           
       1433 ACGCCACT-AATTAGCAGCGTTTTGTTCAATAG
          1 ACGCCGCTAAATTAGCAGCGTTTTGTTCAATAG

                           **           **   
       1465 ACGCCGCTAAATTAGTGGCGTTTTGTTCTTTAG
          1 ACGCCGCTAAATTAGCAGCGTTTTGTTCAATAG

                     
       1498 ACGCCGCTA
          1 ACGCCGCTA

       1507 TTTGCCAGCA


Statistics
Matches: 36,  Mismatches: 5, Indels: 1
        0.86            0.12        0.02

Matches are distributed among these distances:
  32    7  0.19
  33   29  0.81

ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32


Consensus pattern (33 bp):   
ACGCCGCTAAATTAGCAGCGTTTTGTTCAATAG
Done.