Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010328.1 Corchorus olitorius cultivar O-4 contig10360, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4411
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:3367 original size:22 final size:22

Alignment explanation


    Indices: 3339--3389  Score: 93
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       3329 GCATGACACG

                                  
       3339 GCACGACCCACGTGCCGGCACA
          1 GCACGACCCACGTGCCGGCACA

                               *  
       3361 GCACGACCCACGTGCCGGCGCA
          1 GCACGACCCACGTGCCGGCACA

                   
       3383 GCACGAC
          1 GCACGAC

       3390 ATATTTTTAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.22, C:0.45, G:0.29, T:0.04


Consensus pattern (22 bp):   
GCACGACCCACGTGCCGGCACA
Done.