Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010333.1 Corchorus olitorius cultivar O-4 contig10365, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4355
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:3878 original size:16 final size:16

Alignment explanation


    Indices: 3841--3881  Score: 75
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       3831 CAGAGGTTGA

                            
       3841 TAGAAAACAATTAAAC
          1 TAGAAAACAATTAAAC

                            
       3857 -AGAAAACAATTAAAC
          1 TAGAAAACAATTAAAC

                      
       3872 TAGAAAACAA
          1 TAGAAAACAA

       3882 AGCAAAGTAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  15   15  0.62
  16    9  0.38

ACGTcount: A:0.66, C:0.12, G:0.07, T:0.15


Consensus pattern (16 bp):   
TAGAAAACAATTAAAC
Done.