Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010336.1 Corchorus olitorius cultivar O-4 contig10368, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4748
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:3185 original size:19 final size:19

Alignment explanation


    Indices: 3161--3200  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3151 AAAAAATGGA

                               
       3161 TTGGAGAATCGATGTGTGT
          1 TTGGAGAATCGATGTGTGT

                  *            
       3180 TTGGAGGATCGATGTGTGT
          1 TTGGAGAATCGATGTGTGT

              
       3199 TT
          1 TT

       3201 TTTGCAGTGC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.17, C:0.05, G:0.38, T:0.40


Consensus pattern (19 bp):   
TTGGAGAATCGATGTGTGT
Done.