Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010348.1 Corchorus olitorius cultivar O-4 contig10380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9797
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:9687 original size:80 final size:80

Alignment explanation


    Indices: 9554--9795  Score: 468
    Period size: 80  Copynumber: 3.0  Consensus size: 80

       9544 ACTACTATAT

                                                                             
       9554 TCTCTGCATGCTAGTATAGTATTTTCTTTGGACGAATAAATGTAATTAATAACACAAAAAGAAAT
          1 TCTCTGCATGCTAGTATAGTATTTTCTTTGGACGAATAAATGTAATTAATAACACAAAAAGAAAT

                           
       9619 TACTAGTAGCAGTAG
         66 TACTAGTAGCAGTAG

                                         *                                   
       9634 TCTCTGCATGCTAGTATAGTATTTTCTTTAGACGAATAAATGTAATTAATAACACAAAAAGAAAT
          1 TCTCTGCATGCTAGTATAGTATTTTCTTTGGACGAATAAATGTAATTAATAACACAAAAAGAAAT

                           
       9699 TACTAGTAGCAGTAG
         66 TACTAGTAGCAGTAG

                                                                             
       9714 TCTCTGCATGCTAGTATAGTATTTTCTTTGGACGAATAAATGTAATTAATAACACAAAAAGAAAT
          1 TCTCTGCATGCTAGTATAGTATTTTCTTTGGACGAATAAATGTAATTAATAACACAAAAAGAAAT

                           
       9779 TACTAGTAGCA-TAG
         66 TACTAGTAGCAGTAG

               
       9793 TCT
          1 TCT

       9796 AT


Statistics
Matches: 160,  Mismatches: 2, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
  79    6  0.04
  80  154  0.96

ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33


Consensus pattern (80 bp):   
TCTCTGCATGCTAGTATAGTATTTTCTTTGGACGAATAAATGTAATTAATAACACAAAAAGAAAT
TACTAGTAGCAGTAG
Done.