Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010352.1 Corchorus olitorius cultivar O-4 contig10384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2812
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:421 original size:2 final size:2
Alignment explanation
Indices: 414--446 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
404 CACTTATAGA
*
414 AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
447 ATTCAATTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:779 original size:355 final size:358
Alignment explanation
Indices: 72--1024 Score: 1072
Period size: 375 Copynumber: 2.6 Consensus size: 358
62 CTTTGGCCAA
* *
72 AACACTTATAGAATATATATAATTCAATGCCAAAAAGTTTGAAGGGTTTTTCACGATTCGAATAT
1 AACAC-TATAGAATATATATAATTCAATTCCAAAAAGTTTGAAGGGTTTTTCACGATTCTAATAT
* * *
137 CGATTTTCCTATATCTTTCCGAATTAA-TACTGAATAAATCGAAACATGATTCTGATGCCCGTAA
65 CGATTTTCCTATATCTTTCCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCACGTAA
* * * * * *
201 AATCAATTTCTTAAATCCAATTTGGCTGA-ATTTTGCTTAGATGAATATAGAGATATCAAGGTGT
130 AATCAAATCCTTAAATCCAATTTGGCTGAGA-TTTGGTTAGATGAATATAGATATGTCAAGGAGT
* *
265 CTCGGGGCAAACAATCATTAAAAACTGAGCCGGTGCCCCGAAAGCGTTTGTAGCCAAAAACCGTG
194 CTCGGGGCAAAC-ATCATTAAAAACTTAGCAGGTGCCCCGAAAGCGTTTGTAGCCAAAAACCGTG
* ** *
330 ATGGTTAGTCAACGATTTCGGCTAAAAGTTTGCAAAAATTGACGCGAAAGTTTTTTCCACTATAT
258 ATGGTTAGTCAACGATTTCGGCTAAAAATTTGCAAAAACAGACCCGAAAGTTTTTTCCACTATAT
* *
395 TTGGCAAAACACTTATAGAATATATATATAT-A-TTT
323 TTGCCAAAACACTAATAGAATATATATAT-TCACTTT
* * * * *
430 -ATA-TATA-TATATATATAATTCAATTCCAAACACTTTGAAGGGTTTTTCACGTTTCTAATATC
1 AACACTATAGAATATATATAATTCAATTCCAAAAAGTTTGAAGGGTTTTTCACGATTCTAATATC
* *
492 GATTTTCCTATATCTTTCCGAATTAATTTCTGATTAAATCGAAACCTGATTCTGATGCTCGTAAA
66 GATTTTCCTATATCTTTCCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCACGTAAA
* * *
557 ATCAAATCCATAAATCCAATTTGGCTGAGATTTGGTTTGATGAATATAAATATGTCAAGGAGTCT
131 ATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAGGAGTCT
* * *
622 TGGGGCCAAA-ATTCATT-AAAACTTAGTA-GTGGCCCCAGAACGCGTTT-TCAGCCAAAAAAAC
196 CGGGG-CAAACA-TCATTAAAAACTTAGCAGGT-GCCCC-GAAAGCGTTTGT-AGCC--AAAAAC
* *
683 TGTGATGGTTAGAT-ACATGATTTCGGCTAAAAATTTGCAAAAACAGACCCGAAAGTTTTTTCCA
254 CGTGATGGTTAG-TCA-ACGATTTCGGCTAAAAATTTGCAAAAACAGACCCGAAAGTTTTTTCCA
* * *
747 -TAATCTTTTTCCAAAACACTAATAGAATATATATTTTCCACAATCTTT
317 CT-AT-ATTTGCCAAAACACTAATAGAATATATATATT---C-A-CTTT
** * *
795 GGCCAAAACACTTATAGAATATATATAATTCGACGT-CAAAAAGATTGAAGGGTTTTTCATGCA-
1 ------AACAC-TATAGAATATATATAATTC-AATTCCAAAAAGTTTGAAGGGTTTTTCACG-AT
* * * * * *
858 TCTAATATCGATTTTCTTATATCTTTTCGAATTAATATCTGATTAAAACAAAACATGATTATGAT
57 TCTAATATCGATTTTCCTATATCTTTCCGAATTAATTTCTGATTAAATCGAAACATGATTCTGAT
*
923 GCACGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTGGATGAATATAGATATGTC
122 GCACGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTC
* * *
988 AAGGAGTCTCGGGTTCAAAGATCATTGAAAACTTAGC
187 AAGGAGTCTCGGG-GCAAACATCATTAAAAACTTAGC
1025 CGGGGCAGCG
Statistics
Matches: 501, Mismatches: 59, Indels: 52
0.82 0.10 0.08
Matches are distributed among these distances:
353 2 0.00
354 90 0.18
355 114 0.23
356 5 0.01
357 21 0.04
358 47 0.09
359 26 0.05
363 1 0.00
365 3 0.01
372 2 0.00
374 4 0.01
375 174 0.35
376 12 0.02
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Consensus pattern (358 bp):
AACACTATAGAATATATATAATTCAATTCCAAAAAGTTTGAAGGGTTTTTCACGATTCTAATATC
GATTTTCCTATATCTTTCCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCACGTAAA
ATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAGGAGTCT
CGGGGCAAACATCATTAAAAACTTAGCAGGTGCCCCGAAAGCGTTTGTAGCCAAAAACCGTGATG
GTTAGTCAACGATTTCGGCTAAAAATTTGCAAAAACAGACCCGAAAGTTTTTTCCACTATATTTG
CCAAAACACTAATAGAATATATATATTCACTTT
Found at i:785 original size:40 final size:40
Alignment explanation
Indices: 740--820 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
730 CCCGAAAGTT
* **
740 TTTTCCATAATCTTTTTCCAAAACACTAATAGAATATATA
1 TTTTCCACAATCTTTGGCCAAAACACTAATAGAATATATA
*
780 TTTTCCACAATCTTTGGCCAAAACACTTATAGAATATATA
1 TTTTCCACAATCTTTGGCCAAAACACTAATAGAATATATA
820 T
1 T
821 AATTCGACGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (40 bp):
TTTTCCACAATCTTTGGCCAAAACACTAATAGAATATATA
Found at i:1818 original size:332 final size:332
Alignment explanation
Indices: 1195--2736 Score: 2203
Period size: 332 Copynumber: 4.6 Consensus size: 332
1185 AAAAGAGAGT
* *
1195 TAGTACACGATTT-GGCTAAAATTTTGCAAAAATTGACCCGAAA-AGTTTTTTCCACTATCTTTG
1 TAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGA-TTTTTTCCACAATCTTTG
* * *
1258 GCCATAACACTTATAGAATATA-TATAATTCAACGCCAAAAAGTTTGAAGGATTTTTCACGATTC
65 GCCAAAACACTTATAGAA-ATAGTATAATTCAACGCCAAAAAGATTGAAGG-TTTTTCACGTTTC
* * * *
1322 GAATATCGATTTTTCCTATATCTTTCCGAATTAATTTCTGAATAAATCGAAACATGATTCTGATG
128 TAATATCGA-TTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATG
1387 CTCGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCA
192 CTCGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCA
*
1452 AGGAGTCTCGGGGCCAAAAATCATTGAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAA
257 AGGAGTCTCGTGGCCAAAAATCATTGAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAA
1517 AACCGTGATGG
322 AACCGTGATGG
* * *
1528 -AATACACAATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCACAATCTTTGG
1 TAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCACAATCTTTGG
* * *
1592 CGAAAACACTTATAGAAATAGAATAATTCAACGCCAAACAGATTGAAGAGTTTTTCACGTTTCTA
66 CCAAAACACTTATAGAAATAGTATAATTCAACGCCAAAAAGATTGAAG-GTTTTTCACGTTTCTA
* *
1657 ATATCAATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTCATTCTGATGCTC
130 ATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATGCTC
*
1722 GTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAATG
195 GTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAGG
* * * *
1787 AGTCTCGTGGCCATAAATCATT-AAGAACTGAGTCGGGGCCCCGGAACGCGTTTATAGCCAAAAC
260 AGTCTCGTGGCCAAAAATCATTGAA-AACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAA
1851 CCGTGATGG
324 CCGTGATGG
*
1860 TTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGATCCGAAAG-TTTTTTCCACAATCTTTG
1 -TAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCACAATCTTTG
* * *
1924 GCCAAAACACTTATAG-AATAGAATAATTCAACGCCAAAAACATTGAAGGGTTTTTCACGCTTCT
65 GCCAAAACACTTATAGAAATAGTATAATTCAACGCCAAAAAGATTGAA-GGTTTTTCACGTTTCT
1988 AATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATGCT
129 AATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATGCT
2053 CGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAG
194 CGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAG
* * * * *
2118 GAGTCTTGTGGCCATAAATCATTAAAAACTGAGCCGGGGCCCCGGAACGAGTTTTTAGCCAAAAC
259 GAGTCTCGTGGCCAAAAATCATTGAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAA
2183 CCGTGATGG
324 CCGTGATGG
* * * *
2192 TTAGTAAACGATTTTTGCTAAGATTTTTCAAAAATTGACCCGAAAGA-TTTTTCCACAATCTTTG
1 -TAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCACAATCTTTG
* * * *
2256 GCCAAATCGCTAATAG-AATATGTAT-TTTCCACAATCTTTGGCCAAAACACTTATAGAATATAT
65 GCCAAAACACTTATAGAAATA-GTATAATT---CAA-C----GCC--AA-A---A-AG-----AT
* * *
2319 ATATAAGGGTTTTCACGTTTCTAATATCGATTTTCCTATATGTTTTCGAATTAATTTCTGATTAA
109 -T-GAAGGTTTTTCACGTTTCTAATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAA
*
2384 ATCGAAACTTGATTCTGATGCTCGTAAAATCAAATCCTTAAATCAAATTTGGCTGAGATTTGGTT
172 ATCGAAACTTGATTCTGATGCTCGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTT
2449 AGATGAATATAGATATGTCAAGGAGTCTCAG-GGCCAAAAATCATTGAAAACTGA-CCGGGGCCC
237 AGATGAATATAGATATGTCAAGGAGTCTC-GTGGCCAAAAATCATTGAAAACTGAGCCGGGGCCC
* **
2512 CGGAACGCGTTTTTATCCAAAAAACTATGATGG
301 CGGAACGCGTTTTTAGCC-AAAAACCGTGATGG
*
2545 TTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCCACAATCCTTG
1 -TAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCACAATCTTTG
* *
2609 GCCAAAACACTTATAGAATATA-TATAATTCAACGCCAAAAAAATTAAAGGCTTTTTCACGTTTC
65 GCCAAAACACTTATAGAA-ATAGTATAATTCAACGCCAAAAAGATTGAAGG-TTTTTCACGTTTC
2673 TAATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATG
128 TAATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATG
2737 TCAAGGAGTC
Statistics
Matches: 1097, Mismatches: 73, Indels: 78
0.88 0.06 0.06
Matches are distributed among these distances:
331 2 0.00
332 514 0.47
333 221 0.20
334 44 0.04
335 3 0.00
336 1 0.00
339 1 0.00
340 4 0.00
342 2 0.00
343 2 0.00
344 2 0.00
346 4 0.00
347 1 0.00
350 1 0.00
351 3 0.00
352 27 0.02
353 256 0.23
354 6 0.01
355 3 0.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Consensus pattern (332 bp):
TAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCACAATCTTTGG
CCAAAACACTTATAGAAATAGTATAATTCAACGCCAAAAAGATTGAAGGTTTTTCACGTTTCTAA
TATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATGCTCG
TAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAGGA
GTCTCGTGGCCAAAAATCATTGAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACC
GTGATGG
Found at i:2294 original size:40 final size:40
Alignment explanation
Indices: 2240--2316 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
2230 CCCGAAAGAT
* *
2240 TTTTCCACAATCTTTGGCCAAATCGCTAATAGAATATGTA
1 TTTTCCACAATCTTTGGCCAAAACACTAATAGAATATGTA
*
2280 TTTTCCACAATCTTTGGCCAAAACACTTATAGAATAT
1 TTTTCCACAATCTTTGGCCAAAACACTAATAGAATAT
2317 ATATATAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (40 bp):
TTTTCCACAATCTTTGGCCAAAACACTAATAGAATATGTA
Found at i:2492 original size:685 final size:665
Alignment explanation
Indices: 1193--2736 Score: 2294
Period size: 685 Copynumber: 2.3 Consensus size: 665
1183 CTAAAAGAGA
* *
1193 GTTAGTACACGATTT-GGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTTTTTCCACTATCTTT
1 GTTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCG-AAAGTTTTTTCCACAATCTTT
* **
1257 GGCCATAACACTTATAGAATATATATAATTCAACGCCAAAAAGTTTGAAGGATTTTTCACGATTC
65 GGCCAAAACACTTATAGAATATATATAATTCAACGCCAAAAAAATTGAAGGATTTTTCACGATTC
* * * *
1322 GAATATCGATTTTTCCTATATCTTTCCGAATTAATTTCTGAATAAATCGAAACATGATTCTGATG
130 TAATATCGA-TTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATG
1387 CTCGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCA
194 CTCGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCA
* *
1452 AGGAGTCTCGGGGCCAAAAATCATTGAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAA
259 AGGAGTCTCGGGGCCAAAAATCATTAAAAACTGAGCCGGGGCCCCGGAACGAGTTTTTAGCCAAA
*
1517 AACCGTGATGGAATACACAATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCA
324 AACCGTGATGGAATAAACAATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCA
* * * *
1582 CAATCTTTGGCGAAAACACTTATAGAAATAGAATAATTCAACGCCAAACAGATTGAAGAGTTTTT
389 CAATCTTTGGCCAAAACACTAATAGAAATAGAATAATTCAACGCCAAACAGATTGAAAAGGTTTT
1647 CACGTTTCTAATATCAATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTCAT
454 CACGTTTCTAATATCAATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTCAT
*
1712 TCTGATGCTCGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGA
519 TCTGATGCTCGTAAAATCAAATCCTTAAATCAAATTTGGCTGAGATTTGGTTAGATGAATATAGA
* * *
1777 TATGTCAATGAGTCTCGTGGCCATAAATCATT-AAGAACTGAGTCGGGGCCCCGGAACGCGTTTA
584 TATGTCAAGGAGTCTCGTGGCCAAAAATCATTGAA-AACTGA-CCGGGGCCCCGGAACGCGTTTA
* *
1841 TAGCC-AAAACCCGTGATG
647 TAGCCAAAAAACCATGATG
*
1859 GTTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGATCCGAAAGTTTTTTCCACAATCTTTG
1 GTTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGTTTTTTCCACAATCTTTG
* * * *
1924 GCCAAAACACTTATAGAATAGA-ATAATTCAACGCCAAAAACATTGAAGGGTTTTTCACGCTTCT
66 GCCAAAACACTTATAGAATATATATAATTCAACGCCAAAAAAATTGAAGGATTTTTCACGATTCT
1988 AATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATGCT
131 AATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATGCT
2053 CGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAG
196 CGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAG
* * * *
2118 GAGTCTTGTGGCCATAAATCATTAAAAACTGAGCCGGGGCCCCGGAACGAGTTTTTAGCCAAAAC
261 GAGTCTCGGGGCCAAAAATCATTAAAAACTGAGCCGGGGCCCCGGAACGAGTTTTTAGCCAAAAA
* * ** * *
2183 CCGTGATGGTTAGTAAACGATTTTTGCTAAGATTTTTCAAAAATTGACCCGAAAGA-TTTTTCCA
326 CCGTGATGG--AATAAACAATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCA
* * * *
2247 CAATCTTTGGCCAAATCGCTAATAG-AATATGTAT-TTTCCACAATCTTTGGCCAAAACACTTAT
389 CAATCTTTGGCCAAAACACTAATAGAAATA-GAATAATT---CAA-C----GCC--AA-AC----
* * *
2310 AGAATATATATATAAGGGTTTTCACGTTTCTAATATCGATTTTCCTATATGTTTTCGAATTAATT
438 AG-AT-T-GA-A-AA-GGTTTTCACGTTTCTAATATCAATTTTCCTATATGTTTCCGAATTAATT
*
2375 TCTGATTAAATCGAAACTTGATTCTGATGCTCGTAAAATCAAATCCTTAAATCAAATTTGGCTGA
497 TCTGATTAAATCGAAACTTCATTCTGATGCTCGTAAAATCAAATCCTTAAATCAAATTTGGCTGA
2440 GATTTGGTTAGATGAATATAGATATGTCAAGGAGTCTCAG-GGCCAAAAATCATTGAAAACTGAC
562 GATTTGGTTAGATGAATATAGATATGTCAAGGAGTCTC-GTGGCCAAAAATCATTGAAAACTGAC
* * *
2504 CGGGGCCCCGGAACGCGTTTTTATCCAAAAAACTATGATG
626 CGGGGCCCCGGAACGCGTTTATAGCCAAAAAACCATGATG
* *
2544 GTTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCACAATCCTTG
1 GTTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGTTTTTTCCACAATCTTTG
* * *
2609 GCCAAAACACTTATAGAATATATATAATTCAACGCCAAAAAAATTAAAGGCTTTTTCACGTTTCT
66 GCCAAAACACTTATAGAATATATATAATTCAACGCCAAAAAAATTGAAGGATTTTTCACGATTCT
2674 AATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATG
131 AATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATG
2737 TCAAGGAGTC
Statistics
Matches: 794, Mismatches: 55, Indels: 38
0.90 0.06 0.04
Matches are distributed among these distances:
664 193 0.24
665 77 0.10
666 94 0.12
667 28 0.04
668 1 0.00
672 3 0.00
674 2 0.00
675 2 0.00
679 2 0.00
680 2 0.00
681 1 0.00
682 1 0.00
683 1 0.00
684 25 0.03
685 258 0.32
686 104 0.13
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (665 bp):
GTTAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGACCCGAAAGTTTTTTCCACAATCTTTG
GCCAAAACACTTATAGAATATATATAATTCAACGCCAAAAAAATTGAAGGATTTTTCACGATTCT
AATATCGATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTGATTCTGATGCT
CGTAAAATCAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGATGAATATAGATATGTCAAG
GAGTCTCGGGGCCAAAAATCATTAAAAACTGAGCCGGGGCCCCGGAACGAGTTTTTAGCCAAAAA
CCGTGATGGAATAAACAATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCACA
ATCTTTGGCCAAAACACTAATAGAAATAGAATAATTCAACGCCAAACAGATTGAAAAGGTTTTCA
CGTTTCTAATATCAATTTTCCTATATGTTTCCGAATTAATTTCTGATTAAATCGAAACTTCATTC
TGATGCTCGTAAAATCAAATCCTTAAATCAAATTTGGCTGAGATTTGGTTAGATGAATATAGATA
TGTCAAGGAGTCTCGTGGCCAAAAATCATTGAAAACTGACCGGGGCCCCGGAACGCGTTTATAGC
CAAAAAACCATGATG
Done.