Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010357.1 Corchorus olitorius cultivar O-4 contig10389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4896
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:2876 original size:14 final size:15

Alignment explanation


    Indices: 2857--2886  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2847 CAATCAAAGC

                           
       2857 AATAAT-CAAGGAAA
          1 AATAATGCAAGGAAA

                           
       2871 AATAATGCAAGGAAA
          1 AATAATGCAAGGAAA

             
       2886 A
          1 A

       2887 TTAAAAAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13


Consensus pattern (15 bp):   
AATAATGCAAGGAAA

Found at i:3272 original size:21 final size:21

Alignment explanation


    Indices: 3239--3293  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       3229 GGCTTGGAAT

                *   *         *  
       3239 GGTGATGGTACGGGCATGGCC
          1 GGTGGTGGAACGGGCATGACC

                    *      *     
       3260 GGTGGTGGCACGGGCTTGACC
          1 GGTGGTGGAACGGGCATGACC

                         
       3281 GGTGGTGGAACGG
          1 GGTGGTGGAACGG

       3294 TGAATGGGCG


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.13, C:0.18, G:0.51, T:0.18


Consensus pattern (21 bp):   
GGTGGTGGAACGGGCATGACC
Done.